RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZNF419Q96HQ0 510 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 IPO9Q96P70 1041 aaKnown RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 ADAM33Q9BZ11 813 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 SLC32A1Q9H598 525 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 WSB2Q9NYS7 404 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 ARMCX3Q9UH62 379 aaPredicted RBP12.09□□□□□ -0.47
USP4-204ENST00000416417 KLK13Q9UKR3 277 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 PCDHB4Q9Y5E5 795 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 GTF3C3Q9Y5Q9 886 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 CEP192Q8TEP8 1941 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 CFAP47Q6ZTR5 3102 aa12.09□□□□□ -0.47
USP4-204ENST00000416417 PCDH15Q96QU1 1955 aa12.08□□□□□ -0.47
USP4-204ENST00000416417 GON4LQ3T8J9 2241 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 GOLGA6L4A6NEF3 574 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 MEI4A8MW99 385 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 SH3BP5O60239 455 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 SYNCRIPO60506 623 aaKnown RBP12.08□□□□□ -0.48
USP4-204ENST00000416417 VDRP11473 427 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 NCAM1P13591 858 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 TPMTP51580 245 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 PMF1Q6P1K2 205 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 RRAGAQ7L523 313 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 ARHGEF19Q8IW93 802 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 FAM217AQ8IXS0 508 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 SIX6OS1Q8N1H7 587 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 CPXM2Q8N436 756 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 ZCCHC9Q8N567 271 aaKnown RBP12.08□□□□□ -0.48
USP4-204ENST00000416417 WFDC5Q8TCV5 224 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 UCMAQ8WVF2 138 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 MYEOVQ96EZ4 313 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 SIPA1Q96FS4 1042 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 FAXDC2Q96IV6 333 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 GSDMAQ96QA5 445 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 TMEM121BQ9BXQ6 578 aaPredicted RBP12.08□□□□□ -0.48
USP4-204ENST00000416417 CEP295Q9C0D2 2601 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 MTG2Q9H4K7 406 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 IL21RQ9HBE5 538 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 ITM2CQ9NQX7 267 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 ABCB8Q9NUT2 735 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 USP36Q9P275 1121 aaKnown RBP12.08□□□□□ -0.48
USP4-204ENST00000416417 MAN1B1Q9UKM7 699 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 ZMIZ1Q9ULJ6 1067 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 SLCO1B1Q9Y6L6 691 aa12.08□□□□□ -0.48
USP4-204ENST00000416417 M0QYV0 167 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 SMC2O95347 1197 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 HLA-FP30511 346 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 HOXD12P35452 270 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 DPP6P42658 865 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 FMO5P49326 533 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 HARS2P49590 506 aaKnown RBP12.07□□□□□ -0.48
USP4-204ENST00000416417 DAOAP59103 153 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 ARID5AQ03989 594 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 GRIK2Q13002 908 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 ENPP2Q13822 863 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 CCDC40Q4G0X9 1142 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 PKDCCQ504Y2 493 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 FNDC3BQ53EP0 1204 aaKnown RBP12.07□□□□□ -0.48
USP4-204ENST00000416417 COBLL1Q53SF7 1204 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 SYCP2LQ5T4T6 812 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 DCAF12L1Q5VU92 463 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 SERPINA13PQ6UXR4 307 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 CHST9Q7L1S5 443 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 PPM1KQ8N3J5 372 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 CHCHD4Q8N4Q1 142 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 SPATA20Q8TB22 786 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 PRCCQ92733 491 aaPredicted RBP12.07□□□□□ -0.48
USP4-204ENST00000416417 CCDC34Q96HJ3 373 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 MIS12Q9H081 205 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 STIM2Q9P246 746 aa12.07□□□□□ -0.48
USP4-204ENST00000416417 ASCC3Q8N3C0 2202 aaKnown RBP12.07□□□□□ -0.48
USP4-204ENST00000416417 BIN1O00499 593 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 TBL1XO60907 577 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 BMP6P22004 513 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 SLC6A4P31645 630 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 NUMBP49757 651 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 STX17P56962 302 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 YWHAEP62258 255 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 MPPE1Q53F39 396 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 LCLAT1Q6UWP7 414 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 SNX19Q92543 992 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 GATA6Q92908 595 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 TMA16Q96EY4 203 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 NT5C1BQ96P26 610 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 OLA1Q9NTK5 396 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 EIF2B4Q9UI10 523 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 HBS1LQ9Y450 684 aaKnown RBP12.06□□□□□ -0.48
USP4-204ENST00000416417 SYPP08247 313 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 SETSIPP0DME0 302 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 ACADMP11310 421 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 CD70P32970 193 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 BNC1Q01954 994 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 LRRC63Q05C16 580 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 WDR45BQ5MNZ6 344 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 NADSYN1Q6IA69 706 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 ADIPOR2Q86V24 386 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 PNPLA1Q8N8W4 532 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 LMO3Q8TAP4 145 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 ADAM32Q8TC27 787 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 SLC35F5Q8WV83 523 aa12.06□□□□□ -0.48
USP4-204ENST00000416417 KCTD13Q8WZ19 329 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms