RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 FIBCD1Q8N539 461 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 FNIP1Q8TF40 1166 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 TEKT4Q8WW24 435 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ATG4AQ8WYN0 398 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 IRGQQ8WZA9 623 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 TMA16Q96EY4 203 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ATXN7L3BQ96GX2 97 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 TMEM121Q9BTD3 319 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 SENP6Q9GZR1 1112 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 RNPEPQ9H4A4 650 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 SMARCAL1Q9NZC9 954 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 PCYOX1Q9UHG3 505 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 HNRNPRO43390 633 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF862O60290 1169 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 E2F6O75461 281 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 PGK1P00558 417 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 OR1E1P30953 314 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 XRCC4Q13426 336 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 SLC45A4Q5BKX6 768 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 RARS2Q5T160 578 aaKnown RBP12.3□□□□□ -0.44
PTPRF-205ENST00000414879 WSCD1Q658N2 575 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ASB2Q96Q27 587 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 SMYD3Q9H7B4 428 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 ATP13A1Q9HD20 1204 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 MLXIPLQ9NP71 852 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 MSRAQ9UJ68 235 aa12.3□□□□□ -0.44
PTPRF-205ENST00000414879 AP5Z1O43299 807 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 LZTS3O60299 673 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 SNUPNO95149 360 aaKnown RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 MYL4P12829 197 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 YBX3P16989 372 aaKnown RBP eCLIP12.29□□□□□ -0.449e-8■■□□□ 11.5
PTPRF-205ENST00000414879 CDH2P19022 906 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 ACAT1P24752 427 aaKnown RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 CDK7P50613 346 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 GRAMD1BQ3KR37 738 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 CCDC153Q494R4 210 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 ARMC6Q6NXE6 501 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 STRADAQ7RTN6 431 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 ST13P4Q8IZP2 240 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 NUP93Q8N1F7 819 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 NLGN2Q8NFZ4 835 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 GMLQ99445 158 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 FICDQ9BVA6 458 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 DUSP16Q9BY84 665 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 GIMAP4Q9NUV9 329 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 GPATCH2LQ9NWQ4 482 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 BTBD7Q9P203 1132 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 FZD1Q9UP38 647 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 DOLKQ9UPQ8 538 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 RPTORQ8N122 1335 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 DOT1LQ8TEK3 1739 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 O00370 1275 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 SYNCRIPO60506 623 aaKnown RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 ASGR1P07306 291 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 WASHC5Q12768 1159 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 HSDL1Q3SXM5 330 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 MFSD7Q6UXD7 560 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 UBA2Q9UBT2 640 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 RIPK3Q9Y572 518 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 GOLGA8RI6L899 631 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 PBX1P40424 430 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 DLG4P78352 724 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 MOB2Q70IA6 237 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 SCUBE3Q8IX30 993 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 HASPINQ8TF76 798 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 PAFAH2Q99487 392 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 RBBP8Q99708 897 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 CPNE1Q99829 537 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 POLR1EQ9GZS1 481 aaKnown RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 NT5MQ9NPB1 228 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 CHORDC1Q9UHD1 332 aaPredicted RBP12.29□□□□□ -0.44
PTPRF-205ENST00000414879 NUP188Q5SRE5 1749 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 NRAPQ86VF7 1730 aa12.29□□□□□ -0.44
PTPRF-205ENST00000414879 TRAV19A0A0A6YYK7 116 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PRPF4O43172 522 aaKnown RBP eCLIP12.28□□□□□ -0.441e-6■■■■□ 22.4
PTPRF-205ENST00000414879 TRUB2O95900 331 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 PYGMP11217 842 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 BDNFP23560 247 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 FMO1Q01740 532 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ITIH4Q14624 930 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 MROH9Q5TGP6 573 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 DENND1BQ6P3S1 775 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 LCLAT1Q6UWP7 414 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ILDR2Q71H61 639 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ZCCHC9Q8N567 271 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 C1QTNF7Q9BXJ2 289 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 FUT8Q9BYC5 575 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 SHANK3Q9BYB0 1731 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 SYF2O95926 243 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 EOMESO95936 686 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 MATKP42679 507 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 CD151P48509 253 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 HNRNPH2P55795 449 aaKnown RBP12.28□□□□□ -0.44
PTPRF-205ENST00000414879 C9orf57Q5W0N0 161 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 BBS12Q6ZW61 710 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 MON1AQ86VX9 555 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 ZNF384Q8TF68 577 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 STK32AQ8WU08 396 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 LRRC19Q9H756 370 aa12.28□□□□□ -0.44
PTPRF-205ENST00000414879 GDF3Q9NR23 364 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms