RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 EPHB2P29323 1055 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 EIF2B2P49770 351 aaKnown RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 CLCN6P51797 869 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 CAMK2GQ13555 558 aaPredicted RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 MPPE1Q53F39 396 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 SPATA1Q5VX52 437 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 HLA-DQA1Q5Y7H0 255 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 PID1Q7Z2X4 250 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 DENND1CQ8IV53 801 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 GPR135Q8IZ08 494 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 C2orf15Q8WU43 125 aaKnown RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 SPIRE2Q8WWL2 714 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 MTBPQ96DY7 904 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 PAGE5Q96GU1 130 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 MID2Q9UJV3 735 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 ADAM21Q9UKJ8 722 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 STARD13Q9Y3M8 1113 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 ZNF839A8K0R7 811 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 DNALI1O14645 258 aaPredicted RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 PALMO75781 387 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 PNMA6AP0CW24 399 aaPredicted RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 RRM1P23921 792 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 CXCL12P48061 93 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 HIF1AQ16665 826 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 INSCQ1MX18 579 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 HSDL1Q3SXM5 330 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 TCP11X2Q5H9J9 407 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 WSCD1Q658N2 575 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 ZPBP2Q6X784 338 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 TAF8Q7Z7C8 310 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 PATL1Q86TB9 770 aaKnown RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 AMIGO3Q86WK7 504 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 SYTL1Q8IYJ3 562 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 TTC13Q8NBP0 860 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 RBM41Q96IZ5 413 aaKnown RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 ADGRE3Q9BY15 652 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 CLEC4MQ9H2X3 399 aaPredicted RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 UBE2ZQ9H832 354 aaPredicted RBP7.51□□□□□ -1.21
SCN9A-202ENST00000409435 TMEM8AQ9HCN3 771 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 IGSF9Q9P2J2 1179 aa7.51□□□□□ -1.21
SCN9A-202ENST00000409435 C2orf81A6NN90 581 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 AP3B1O00203 1094 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CYBAP13498 195 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 NUP62P37198 522 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 TCEA2Q15560 299 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 HIST2H2ACQ16777 129 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 HIST2H2AA3Q6FI13 130 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 HEATR4Q86WZ0 1026 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ZNF655Q8N720 491 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ACE2Q9BYF1 805 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 LATS2Q9NRM7 1088 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ABCC13Q9NSE7 274 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CHORDC1Q9UHD1 332 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 M0R3G1 203 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 AP5Z1O43299 807 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FOXD2O60548 495 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 TJP3O95049 919 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 HNRNPA1P09651 372 aaKnown RBP eCLIP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 OR1E1P30953 314 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 BRCC3P46736 316 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 DGKGP49619 791 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CDH6P55285 790 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PCSK7Q16549 785 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PHF19Q5T6S3 580 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PRSS55Q6UWB4 352 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 RASSF3Q86WH2 238 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 HIPK4Q8NE63 616 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PRPF18Q99633 342 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 TXNRD2Q9NNW7 524 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 KIAA1522Q9P206 1035 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 BLOC1S6Q9UL45 172 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 WBP11Q9Y2W2 641 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 SCAMP3O14828 347 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 GRAP2O75791 330 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 NCF2P19878 526 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 BCL2L1Q07817 233 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 TUBA3CQ13748 450 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 IMPG1Q17R60 797 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PLEKHG6Q3KR16 790 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 ANGPTL8Q6UXH0 198 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 DEFB119Q8N690 84 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CATSPER2Q96P56 530 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FAM117AQ9C073 453 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 THAP9Q9H5L6 903 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 UBIAD1Q9Y5Z9 338 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 A6NCN8 305 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FAM170BA6NMN3 283 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 PRR5-ARHGAP8B1AHC4 643 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 SLC16A3O15427 465 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 MLYCDO95822 493 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 SERPINA4P29622 427 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CAP1Q01518 475 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 DCTN2Q13561 401 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CASP8Q14790 479 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 EPC2Q52LR7 807 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 XKR4Q5GH76 650 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 STOX1Q6ZVD7 989 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 CHST9Q7L1S5 443 aa7.5□□□□□ -1.21
SCN9A-202ENST00000409435 UHMK1Q8TAS1 419 aaKnown RBP7.5□□□□□ -1.21
SCN9A-202ENST00000409435 FAM3CQ92520 227 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms