RNA–Protein interactions for RNA: ENST00000400018.7

SKA3-203, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SKA3, Length 2,745 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-203ENST00000400018 FUBP3Q96I24 572 aaKnown RBP eCLIP12.13□□□□□ -0.47
SKA3-203ENST00000400018 C8orf48Q96LL4 319 aa12.13□□□□□ -0.47
SKA3-203ENST00000400018 PLK2Q9NYY3 685 aa12.13□□□□□ -0.47
SKA3-203ENST00000400018 CCL26Q9Y258 94 aa12.13□□□□□ -0.47
SKA3-203ENST00000400018 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.13□□□□□ -0.47
SKA3-203ENST00000400018 BACE2Q9Y5Z0 518 aa12.13□□□□□ -0.47
SKA3-203ENST00000400018 WDR87Q6ZQQ6 2873 aa12.13□□□□□ -0.47
SKA3-203ENST00000400018 ARHGEF37A1IGU5 675 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 PSTPIP1O43586 416 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 CNTN5O94779 1100 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 PRLRP16471 622 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 KLF1Q13351 362 aaPredicted RBP12.12□□□□□ -0.47
SKA3-203ENST00000400018 SMAD1Q15797 465 aaKnown RBP12.12□□□□□ -0.47
SKA3-203ENST00000400018 ARHGAP36Q6ZRI8 547 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 VN1R2Q8NFZ6 395 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 RIN3Q8TB24 985 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 FNIP1Q8TF40 1166 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 CENPIQ92674 756 aaPredicted RBP12.12□□□□□ -0.47
SKA3-203ENST00000400018 SLC28A3Q9HAS3 691 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 PIH1D1Q9NWS0 290 aaKnown RBP12.12□□□□□ -0.47
SKA3-203ENST00000400018 FZD10Q9ULW2 581 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 SNX24Q9Y343 169 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 ATP8B3O60423 1300 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 PAGE1O75459 146 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 FAM163BP0C2L3 166 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 FAM153BP0C7A2 387 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 RDXP35241 583 aaKnown RBP12.12□□□□□ -0.47
SKA3-203ENST00000400018 PPM1AP35813 382 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 FAM153CQ494X1 144 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 TFDP3Q5H9I0 405 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 RAP1GAP2Q684P5 730 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 NPWQ8N729 165 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 NT5C3BQ969T7 300 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 ERLEC1Q96DZ1 483 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 LGMNQ99538 433 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.12□□□□□ -0.47
SKA3-203ENST00000400018 OR12D3Q9UGF7 316 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 FAM153AQ9UHL3 310 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 SCML2Q9UQR0 700 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 DMDP11532 3685 aa12.12□□□□□ -0.47
SKA3-203ENST00000400018 EFCAB8A8MWE9 144 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 DAPK3O43293 454 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 ADRA1BP35368 520 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 PTPN9P43378 593 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 CLCN4P51793 760 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 ANKRD20A8PQ5CZ79 823 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 GRASPQ7Z6J2 395 aaPredicted RBP12.11□□□□□ -0.47
SKA3-203ENST00000400018 ZDHHC17Q8IUH5 632 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 UNC45BQ8IWX7 931 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 PLD5Q8N7P1 536 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 CMASQ8NFW8 434 aaPredicted RBP12.11□□□□□ -0.47
SKA3-203ENST00000400018 EXD1Q8NHP7 514 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 MYLIPQ8WY64 445 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 CSPG4P5Q96PW8 444 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 TGS1Q96RS0 853 aaKnown RBP12.11□□□□□ -0.47
SKA3-203ENST00000400018 ATXN3LQ9H3M9 355 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 FAM124BQ9H5Z6 455 aaPredicted RBP12.11□□□□□ -0.47
SKA3-203ENST00000400018 MARCH2Q9P0N8 246 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 STAP1Q9ULZ2 295 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 TTC24A2A3L6 582 aaPredicted RBP12.11□□□□□ -0.47
SKA3-203ENST00000400018 ZNF840PA6NDX5 716 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 DPYSL4O14531 572 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 IRAK2O43187 625 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 MFSD11O43934 449 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 LRIG2O94898 1065 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 FBXO21O94952 628 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 KLKB1P03952 638 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 TUBB4AP04350 444 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 ARSEP51690 589 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 OLIG2Q13516 323 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 PIK3R6Q5UE93 754 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 POLNQ7Z5Q5 900 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 MON1AQ86VX9 555 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 DENND1CQ8IV53 801 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 CASKIN2Q8WXE0 1202 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 ZSWIM3Q96MP5 696 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 SLITRK6Q9H5Y7 841 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 ABCC13Q9NSE7 274 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 NFU1Q9UMS0 254 aa12.11□□□□□ -0.47
SKA3-203ENST00000400018 GOLGA8MH3BSY2 632 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 GLUD1P00367 558 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 MAN1A1P33908 653 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 PCK1P35558 622 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 ALFQ53S48 1182 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 LILRA6Q6PI73 481 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 MICALCLQ6ZW33 695 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 FCRL2Q96LA5 508 aaPredicted RBP12.1□□□□□ -0.47
SKA3-203ENST00000400018 DCLK3Q9C098 648 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 DNAI2Q9GZS0 605 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 MTIF3Q9H2K0 278 aaKnown RBP12.1□□□□□ -0.47
SKA3-203ENST00000400018 PRDM12Q9H4Q4 367 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 SHROOM3Q8TF72 1996 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 FSCN2O14926 492 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 BANF1O75531 89 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 KRT7P08729 469 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 BMP1P13497 986 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 EPHB2P29323 1055 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 MAGEA11P43364 429 aa12.1□□□□□ -0.47
SKA3-203ENST00000400018 CKAP4Q07065 602 aaKnown RBP12.1□□□□□ -0.47
SKA3-203ENST00000400018 DLX2Q07687 328 aaPredicted RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms