RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TOR1BO14657 336 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 RAD51BO15315 384 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 INPP4BO15327 924 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 TYROBPO43914 113 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 RAD17O75943 681 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 PARNO95453 639 aaKnown RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 ABCE1P61221 599 aaKnown RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 TAP1Q03518 808 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 SLC10A5Q5PT55 438 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 PLA2G4FQ68DD2 849 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 CES3Q6UWW8 571 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 CAMK1DQ8IU85 385 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 C10orf107Q8IVU9 208 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 DSELQ8IZU8 1212 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 FLCNQ8NFG4 579 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 ATP6V1E2Q96A05 226 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 C12orf43Q96C57 262 aaKnown RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 PRICKLE1Q96MT3 831 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 DNAI2Q9GZS0 605 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 XPNPEP1Q9NQW7 623 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 RIC1Q4ADV7 1423 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 DISP2A7MBM2 1401 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 LOC102724428A0A0B4J2F2 783 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 M0QYV0 167 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 CDK9P50750 372 aaKnown RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 SIK1P57059 783 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 ADGRE1Q14246 886 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 DOK7Q18PE1 504 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 CHSY1Q86X52 802 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 CDKL3Q8IVW4 592 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 THNSL1Q8IYQ7 743 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 DENND1AQ8TEH3 1009 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF669Q96BR6 464 aaPredicted RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 NPAS2Q99743 824 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 SLC38A10Q9HBR0 1119 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 SYBUQ9NX95 663 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 VPS51Q9UID3 782 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 AGO2Q9UKV8 859 aaKnown RBP9.56□□□□□ -0.88
COL28A1-201ENST00000399429 GINS2Q9Y248 185 aa9.56□□□□□ -0.88
COL28A1-201ENST00000399429 NID2Q14112 1375 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 FAM86B1E9PN63 330 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 H0YCG3 227 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 RGL2O15211 777 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 YWHABP31946 246 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 AVPR1AP37288 418 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SEPHS1P49903 392 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CRADDP78560 199 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 KYAT3Q6YP21 454 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF410Q86VK4 478 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 OFCC1Q8IZS5 231 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SLC44A1Q8WWI5 657 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 LRTOMTQ8WZ04 291 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TMIGD2Q96BF3 282 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 C6orf62Q9GZU0 229 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TLE6Q9H808 572 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 MARCH7Q9H992 704 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 AVENQ9NQS1 362 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 AP4E1Q9UPM8 1137 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ATRNO75882 1429 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 FUOMA2VDF0 154 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TPP1O14773 563 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SNPHO15079 494 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CSDE1O75534 798 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SORBS2O94875 1100 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CKMT2P17540 419 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ALOX12P18054 663 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 PIK3R1P27986 724 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 KPNA2P52292 529 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ARPP19P56211 112 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 YWHAHQ04917 246 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 GAD2Q05329 585 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 MAMLD1Q13495 774 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF699Q32M78 642 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF829Q3KNS6 432 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 PAGE2BQ5JRK9 111 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 PPM1LQ5SGD2 360 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ARHGEF16Q5VV41 709 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 METTL21CQ5VZV1 264 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 AKAP14Q86UN6 197 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TTC30AQ86WT1 665 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SYTL1Q8IYJ3 562 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF34Q8IZ26 560 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 BORCS6Q96GS4 357 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 COG4Q9H9E3 785 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 KIDINS220Q9ULH0 1771 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CNTNAP2Q9UHC6 1331 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 FAM149AA5PLN7 773 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 TRIM13O60858 407 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 MYO1DO94832 1006 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 MYL4P12829 197 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 PSMB9P28065 219 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SDC4P31431 198 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 CCDC85BQ15834 202 aaPredicted RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ZNF423Q2M1K9 1284 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 RNASEH2BQ5TBB1 312 aaKnown RBP9.55□□□□□ -0.88
COL28A1-201ENST00000399429 SCARA3Q6AZY7 606 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 FRMD7Q6ZUT3 714 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 ARCQ7LC44 396 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 UNC45BQ8IWX7 931 aa9.55□□□□□ -0.88
COL28A1-201ENST00000399429 HACE1Q8IYU2 909 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms