RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 TRAPPC9Q96Q05 1148 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 TUBGCP5Q96RT8 1024 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 PIH1D1Q9NWS0 290 aaKnown RBP13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SORCS3Q9UPU3 1222 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 MFHAS1Q9Y4C4 1052 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 SSC5DA1L4H1 1573 aa13.11□□□□□ -0.31
SHMT1-205ENST00000395684 TPP1O14773 563 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 ALDH1A2O94788 518 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PRKCGP05129 697 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 ROR2Q01974 943 aaKnown RBP13.1□□□□□ -0.31
SHMT1-205ENST00000395684 HIC1Q14526 733 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PKDCCQ504Y2 493 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 DENND5BQ6ZUT9 1274 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PYDC1Q8WXC3 89 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 COPS5Q92905 334 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 MIS12Q9H081 205 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PDZD7Q9H5P4 517 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 DHX35Q9H5Z1 703 aaKnown RBP13.1□□□□□ -0.31
SHMT1-205ENST00000395684 ASB7Q9H672 318 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 MTMR10Q9NXD2 777 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 HESX1Q9UBX0 185 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 LOC285556D6RIA3 1793 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 ARHGAP42A6NI28 874 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PLIN3O60664 434 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 SIN3BO75182 1162 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 CALRP27797 417 aaKnown RBP13.1□□□□□ -0.31
SHMT1-205ENST00000395684 GMPRP36959 345 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 SEMA5AQ13591 1074 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 TMEM132DQ14C87 1099 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PCLAFQ15004 111 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 SMAD1Q15797 465 aaKnown RBP13.1□□□□□ -0.31
SHMT1-205ENST00000395684 STXBP5Q5T5C0 1151 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 C4orf22Q6V702 233 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 CYS1Q717R9 158 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 TMEM110Q86TL2 294 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 SPATA33Q96N06 139 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 SLC4A5Q9BY07 1137 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 RNPEPQ9H4A4 650 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 S100A14Q9HCY8 104 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 FAM49BQ9NUQ9 324 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PRMT7Q9NVM4 692 aaPredicted RBP13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PNPOQ9NVS9 261 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PDP2Q9P2J9 529 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 KIAA1257Q9ULG3 409 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 PSAT1Q9Y617 370 aa13.1□□□□□ -0.31
SHMT1-205ENST00000395684 A0A087WZ62 844 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 NFKBIEO00221 500 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 FKBP6O75344 327 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 PGK2P07205 417 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 MCF2P10911 925 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 POLE2P56282 527 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 IGBP1P78318 339 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 NIPAL4Q0D2K0 466 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 DPYSL2Q16555 572 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SH3D19Q5HYK7 790 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 STEAP4Q687X5 459 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 CASC4Q6P4E1 433 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 PACS1Q6VY07 963 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 ACOT1Q86TX2 421 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 CLEC4CQ8WTT0 213 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SLC35F5Q8WV83 523 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 FGD4Q96M96 766 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SORT1Q99523 831 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 FDXACB1Q9BRP7 624 aaPredicted RBP13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SHCBP1LQ9BZQ2 653 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SPATC1LQ9H0A9 340 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 EBF3Q9H4W6 596 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 XPNPEP3Q9NQH7 507 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 DPP3Q9NY33 737 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 DTLQ9NZJ0 730 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 APOBEC2Q9Y235 224 aaKnown RBP13.09□□□□□ -0.31
SHMT1-205ENST00000395684 NME7Q9Y5B8 376 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 VAV1P15498 845 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 CNTFP26441 200 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 LRRC36Q1X8D7 754 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 PPM1JQ5JR12 505 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 EFHC1Q5JVL4 640 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 VWA5B1Q5TIE3 1220 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 MARK2Q7KZI7 788 aaKnown RBP13.09□□□□□ -0.31
SHMT1-205ENST00000395684 RSPH3Q86UC2 560 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 C10orf107Q8IVU9 208 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 MFN1Q8IWA4 741 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 QKIQ96PU8 341 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT1-205ENST00000395684 LPIN3Q9BQK8 851 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 MRPL45Q9BRJ2 306 aaKnown RBP13.09□□□□□ -0.31
SHMT1-205ENST00000395684 SIKE1Q9BRV8 207 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 CXCL16Q9H2A7 254 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 IL1RAPL1Q9NZN1 696 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 PIM2Q9P1W9 311 aa13.09□□□□□ -0.31
SHMT1-205ENST00000395684 ADCY6O43306 1168 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 RNASEH1O60930 286 aaKnown RBP13.08□□□□□ -0.31
SHMT1-205ENST00000395684 PROCP04070 461 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 ARF4P18085 180 aaPredicted RBP13.08□□□□□ -0.31
SHMT1-205ENST00000395684 YY1P25490 414 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 IDH3AP50213 366 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 RBP5P82980 135 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 STILQ15468 1287 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 HEATR6Q6AI08 1181 aaKnown RBP13.08□□□□□ -0.31
SHMT1-205ENST00000395684 AAGABQ6PD74 315 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 NETO2Q8NC67 525 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms