RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 PMF1Q6P1K2 205 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 SHKBP1Q8TBC3 707 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 UBA3Q8TBC4 463 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 ARL8AQ96BM9 186 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 FMO2Q99518 471 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 PRDM6Q9NQX0 595 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 IGSF9Q9P2J2 1179 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 PLAAQ9Y263 795 aa10.61□□□□□ -0.71
VPS53-202ENST00000389040 MTCL1Q9Y4B5 1905 aaKnown RBP10.61□□□□□ -0.71
VPS53-202ENST00000389040 A0A1W2PRU2 124 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 SLC34A2O95436 690 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 MAN1A1P33908 653 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 FLT3P36888 993 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 COILP38432 576 aaPredicted RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 USP46P62068 366 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 PDCLQ13371 301 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ZNF268Q14587 947 aaPredicted RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 UAP1Q16222 522 aaPredicted RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 SDHAF4Q5VUM1 108 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 DENND1BQ6P3S1 775 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 LRIG3Q6UXM1 1119 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 TMC3Q7Z5M5 1100 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 TMEM150AQ86TG1 271 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 NPAS3Q8IXF0 933 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 RHOT1Q8IXI2 618 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 SCAMP5Q8TAC9 235 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 FEZF2Q8TBJ5 459 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 GPR152Q8TDT2 470 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 IPO4Q8TEX9 1081 aaKnown RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 LRRC19Q9H756 370 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 KIF9Q9HAQ2 790 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ZNF334Q9HCZ1 680 aaPredicted RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 ZDHHC18Q9NUE0 388 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ASNSD1Q9NWL6 643 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 STRIP2Q9ULQ0 834 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 PRUNE2Q8WUY3 3088 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 PLXNA3P51805 1871 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 MOSPD3O75425 235 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 USP17L7P0C7H9 530 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 RALAP11233 206 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 TCF3P15923 654 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 CCR2P41597 374 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 GABRB2P47870 512 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 NTHL1P78549 312 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ZP2Q05996 745 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 DHX9Q08211 1270 aaKnown RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 SLC5A9Q2M3M2 681 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 EFHC1Q5JVL4 640 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 HECTD3Q5T447 861 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 DAB2IPQ5VWQ8 1189 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 GET4Q7L5D6 327 aaPredicted RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 ARCQ7LC44 396 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 CCDC105Q8IYK2 499 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 KATNAL2Q8IYT4 538 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 CMTM8Q8IZV2 173 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 WDTC1Q8N5D0 677 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ITFG1Q8TB96 612 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 MAIP1Q8WWC4 291 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 SMARCD2Q92925 531 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 ABCC13Q9NSE7 274 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 OLA1Q9NTK5 396 aaKnown RBP10.6□□□□□ -0.71
VPS53-202ENST00000389040 WDR35Q9P2L0 1181 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 IP6K2Q9UHH9 426 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 LCMT1Q9UIC8 334 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 SNX24Q9Y343 169 aa10.6□□□□□ -0.71
VPS53-202ENST00000389040 TRAV19A0A0A6YYK7 116 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 TMEM191CA6NGB0 347 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ANHXE9PGG2 379 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 PPFIA2O75334 1257 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ECI2O75521 394 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 GJB6O95452 261 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 OLFM2O95897 454 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 IL9P15248 144 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 GBP2P32456 591 aaPredicted RBP10.59□□□□□ -0.71
VPS53-202ENST00000389040 AVPR1AP37288 418 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 RPL21P46778 160 aaKnown RBP10.59□□□□□ -0.71
VPS53-202ENST00000389040 KCNQ1P51787 676 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 SLC7A9P82251 487 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ADIGQ0VDE8 80 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 TEAD2Q15562 447 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 DNAJC24Q6P3W2 148 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ZDHHC24Q6UX98 284 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ERICH1Q86X53 443 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 UBLCP1Q8WVY7 318 aaPredicted RBP10.59□□□□□ -0.71
VPS53-202ENST00000389040 SLCO2A1Q92959 643 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 TCEAL4Q96EI5 215 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ASB16Q96NS5 453 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 ZMYND15Q9H091 742 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 GRHL1Q9NZI5 618 aa10.59□□□□□ -0.71
VPS53-202ENST00000389040 TCRBV5S1A1TA0A578 114 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 GOLGA6L10A6NI86 522 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 ECEL1O95672 775 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 OAS1P00973 400 aaKnown RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 CEBPBP17676 345 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 HDCP19113 662 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 KPNA1P52294 538 aaPredicted RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 PLTPP55058 493 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 GSCP56915 257 aaPredicted RBP10.58□□□□□ -0.72
VPS53-202ENST00000389040 DAOAP59103 153 aa10.58□□□□□ -0.72
VPS53-202ENST00000389040 TAS2R40P59535 323 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms