RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 PCDH19Q8TAB3 1148 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 KHSRPQ92945 711 aaKnown RBP eCLIP11.19□□□□□ -0.627e-7■□□□□ 10.6
NEDD9-201ENST00000379433 PCED1BQ96HM7 432 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 TNIP3Q96KP6 325 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 RUNDC3BQ96NL0 473 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 BRD8Q9H0E9 1235 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 TRPV2Q9Y5S1 764 aa11.19□□□□□ -0.62
NEDD9-201ENST00000379433 E2F8A0AVK6 867 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 FAM155AB1AL88 458 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 KCNK1O00180 336 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 DNALI1O14645 258 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 NRP1O14786 923 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 TMEM63AO94886 807 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 IVLP07476 585 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 RAB27AP51159 221 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 TIGD5Q53EQ6 642 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 C6orf118Q5T5N4 469 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 PCGF5Q86SE9 256 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 EXOC3L1Q86VI1 746 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 FBXO36Q8NEA4 188 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 TXLNGYQ9BZA5 131 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 HCSTQ9UBK5 93 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 ANK1P16157 1881 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 MYO9BQ13459 2157 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 CEP290O15078 2479 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 YJEFN3A6XGL0 299 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 E7ENQ6 273 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 HAS3O00219 553 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 APOL1O14791 398 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 UPP2O95045 317 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 HOXD8P13378 290 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 OR1G1P47890 313 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 TUFMP49411 452 aaKnown RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 SP3Q02447 781 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 LMNB2Q03252 620 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 ITGA7Q13683 1181 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 OASLQ15646 514 aaKnown RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 SDE2Q6IQ49 451 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 PPP1R2P3Q6NXS1 205 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 CCBE1Q6UXH8 406 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 LRRC52Q8N7C0 313 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 GSTCDQ8NEC7 633 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 SCAMP5Q8TAC9 235 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 MYCBPAPQ8TBZ2 947 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 ZNF473Q8WTR7 871 aaKnown RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 KCNN1Q92952 543 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 CEP295NLQ96MC4 621 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 ELAC2Q9BQ52 826 aaKnown RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 SYT15Q9BQS2 421 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-201ENST00000379433 PCDH18Q9HCL0 1135 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 LZTS1Q9Y250 596 aa11.18□□□□□ -0.62
NEDD9-201ENST00000379433 SEPT4O43236 478 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 MTRF1O75570 445 aaKnown RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CYBAP13498 195 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 GRIA1P42261 906 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 MRPL28Q13084 256 aaKnown RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 ANKRD20A8PQ5CZ79 823 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 ALKAL1Q6UXT8 129 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CENPUQ71F23 418 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 PLD5Q8N7P1 536 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 GBP7Q8N8V2 638 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 SUN5Q8TC36 379 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CPT1BQ92523 772 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 UROC1Q96N76 676 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CCDC77Q9BR77 488 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 RSAD1Q9HA92 442 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CRTAC1Q9NQ79 661 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 DDIT4Q9NX09 232 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 TMEM88BA6NKF7 163 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 NDUFB5O43674 189 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 USP12O75317 370 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CDC42EP1Q00587 391 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 SPARCL1Q14515 664 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 HIBCHQ6NVY1 386 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 RWDD4Q6NW29 188 aaKnown RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 DENND5BQ6ZUT9 1274 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 BBS12Q6ZW61 710 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 RNF168Q8IYW5 571 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 SH3TC2Q8TF17 1288 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 ANKRD49Q8WVL7 239 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 RNF157Q96PX1 679 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 EPN3Q9H201 632 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 ABI2Q9NYB9 513 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 UBP1Q9NZI7 540 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 GMNCA6NCL1 334 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 APOC4-APOC2K7ER74 178 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 SOAT2O75908 522 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 APOC2P02655 101 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 PKN2Q16513 984 aaKnown RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 LRRC38Q5VT99 294 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 LILRB2Q8N423 598 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 SH3KBP1Q96B97 665 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 CELF6Q96J87 481 aaKnown RBP11.17□□□□□ -0.62
NEDD9-201ENST00000379433 APOL2Q9BQE5 337 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 VRTNQ9H8Y1 702 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 TRPV5Q9NQA5 729 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 KCTD5Q9NXV2 234 aa11.17□□□□□ -0.62
NEDD9-201ENST00000379433 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms