RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 MOCS1Q9NZB8 636 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 PSAT1Q9Y617 370 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 LACTBL1A8MY62 500 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 KLHL2O95198 593 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 VDRP11473 427 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 PTPRAP18433 802 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 TFE3P19532 575 aaPredicted RBP16.89■□□□□ 0.29
SDC4-201ENST00000372733 SERPINB6P35237 376 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 NDST1P52848 882 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 MED21Q13503 144 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 PDPK2PQ6A1A2 396 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 PGM2L1Q6PCE3 622 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 EGFL6Q8IUX8 553 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 DEFB107AQ8IZN7 70 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 PHTF2Q8N3S3 785 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 C12orf29Q8N999 325 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 NCSTNQ92542 709 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 KLHL4Q9C0H6 718 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 NRDE2Q9H7Z3 1164 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 MINDY3Q9H8M7 445 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 IL1RAPL1Q9NZN1 696 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 ITGA11Q9UKX5 1188 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 TBC1D30Q9Y2I9 924 aa16.89■□□□□ 0.29
SDC4-201ENST00000372733 LOC100653049A0A140TA62 436 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 TXNDC9O14530 226 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 GLRA3O75311 464 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 KRT34O76011 436 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 SERPINE1P05121 402 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 PFKMP08237 780 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 UQCRBP14927 111 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 RAG1P15918 1043 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 TPSB2P20231 275 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 ITGAXP20702 1163 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 DYNC1I2Q13409 638 aaKnown RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 LAMB3Q13751 1172 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 TPSAB1Q15661 275 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 BOLA3Q53S33 107 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 PRAMEF18Q5VWM3 479 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 PACS1Q6VY07 963 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 JDP2Q8WYK2 163 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 WRNIP1Q96S55 665 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 SIKE1Q9BRV8 207 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 POMPQ9Y244 141 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 SPDYE16A6NNV3 312 aaPredicted RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 ZBTB42B2RXF5 422 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 GPR25O00155 361 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 ACKR2O00590 384 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 CSDE1O75534 798 aaKnown RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 PRKCGP05129 697 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 NCF2P19878 526 aaPredicted RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 MXD4Q14582 209 aaPredicted RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 GOLGA7BQ2TAP0 167 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 PPM1JQ5JR12 505 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 FRMD7Q6ZUT3 714 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 CXorf38Q8TB03 319 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 ACTRT2Q8TDY3 377 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 TFB1MQ8WVM0 346 aaKnown RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 CLMNQ96JQ2 1002 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 GBA2Q9HCG7 927 aaPredicted RBP16.88■□□□□ 0.29
SDC4-201ENST00000372733 MFHAS1Q9Y4C4 1052 aa16.88■□□□□ 0.29
SDC4-201ENST00000372733 DOCK1Q14185 1865 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 ADCY6O43306 1168 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 SPATA31D3P0C874 917 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 ATXN1P54253 815 aaKnown RBP16.87■□□□□ 0.29
SDC4-201ENST00000372733 BTKQ06187 659 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 NIPAL4Q0D2K0 466 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 KCNT2Q6UVM3 1135 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 SPATA31D4Q6ZUB0 917 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 NCAPG2Q86XI2 1143 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 OLFM3Q96PB7 478 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 EPAS1Q99814 870 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 ZNF670Q9BS34 389 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 C2orf40Q9H1Z8 148 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 STN1Q9H668 368 aaKnown RBP16.87■□□□□ 0.29
SDC4-201ENST00000372733 PICK1Q9NRD5 415 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 GCATO75600 419 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 STK10O94804 968 aaKnown RBP16.87■□□□□ 0.29
SDC4-201ENST00000372733 IL18RAPO95256 599 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 VCLP18206 1134 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 SDC4P31431 198 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 LY6KQ17RY6 165 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 BSPRYQ5W0U4 402 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 FBXL19Q6PCT2 694 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 OLFML1Q6UWY5 402 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 PPP4R1Q8TF05 950 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 JADE3Q92613 823 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 OXCT2Q9BYC2 517 aaPredicted RBP16.87■□□□□ 0.29
SDC4-201ENST00000372733 RNPEPQ9H4A4 650 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 OCEL1Q9H607 264 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 AS3MTQ9HBK9 375 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 ZNF358Q9NW07 568 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 PACSIN3Q9UKS6 424 aa16.87■□□□□ 0.29
SDC4-201ENST00000372733 A6NJR5 290 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 IQCF3P0C7M6 154 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 CNTFP26441 200 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 CLCN3P51790 818 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 HDAC4P56524 1084 aa16.86■□□□□ 0.29
SDC4-201ENST00000372733 SESN2P58004 480 aaPredicted RBP16.86■□□□□ 0.29
SDC4-201ENST00000372733 TBL3Q12788 808 aaKnown RBP16.86■□□□□ 0.29
SDC4-201ENST00000372733 DBN1Q16643 649 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms