RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 ITGA9Q13797 1035 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 HIC1Q14526 733 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 ILDR2Q71H61 639 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 C10orf107Q8IVU9 208 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 CCDC185Q8N715 623 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 ANKRD27Q96NW4 1050 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 PAPSS1O43252 624 aaPredicted RBP12.52□□□□□ -0.41
CLIP3-201ENST00000360535 OPHN1O60890 802 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 DPY19L2Q6NUT2 758 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 RAPH1Q70E73 1250 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 FAM136AQ96C01 138 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 APOL2Q9BQE5 337 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 AP4E1Q9UPM8 1137 aa12.52□□□□□ -0.41
CLIP3-201ENST00000360535 GOLGA8QA0A0J9YX86 632 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 GOLGA8OA6NCC3 632 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 CAPN14A8MX76 684 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 A8MXQ7 604 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 E9PBE3 544 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 GOLGA8NF8WBI6 632 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 NEMP1O14524 444 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 KLHL41O60662 606 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 TM7SF2O76062 418 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 PFKMP08237 780 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 DESP17661 470 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 PAPOLAP51003 745 aaKnown RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 ASPHQ12797 758 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 CUL3Q13618 768 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 VGLL4Q14135 290 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 LBX2Q6XYB7 198 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 MOB2Q70IA6 237 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 TP53INP2Q8IXH6 220 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 C7orf26Q96N11 449 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 OXCT2Q9BYC2 517 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 UNKQ9C0B0 810 aaKnown RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 CPSF2Q9P2I0 782 aaKnown RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 TNFSF13BQ9Y275 285 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 CITO14578 2027 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 KCNK1O00180 336 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 C1QAP02745 245 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 SLC6A3Q01959 620 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 TTLL12Q14166 644 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 PDK2Q15119 407 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 CELF3Q5SZQ8 465 aaKnown RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 RASSF3Q86WH2 238 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 COLGALT1Q8NBJ5 622 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 PPP4R1Q8TF05 950 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 FGD4Q96M96 766 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 FAM49AQ9H0Q0 323 aaPredicted RBP12.51□□□□□ -0.41
CLIP3-201ENST00000360535 ELP3Q9H9T3 547 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 XPNPEP3Q9NQH7 507 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 THAP1Q9NVV9 213 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 SIRPGQ9P1W8 387 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF212Q9UDV6 495 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 SCN1AP35498 2009 aa12.51□□□□□ -0.41
CLIP3-201ENST00000360535 DCXO43602 365 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ETS2P15036 469 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PROZP22891 400 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PRKCHP24723 683 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 RBP5P82980 135 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 NME3Q13232 169 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 Q3C1V9 767 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TEX44Q53QW1 395 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF534Q76KX8 674 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 CDKL3Q8IVW4 592 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PIWIL2Q8TC59 973 aaKnown RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 C18orf25Q96B23 403 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TUBGCP5Q96RT8 1024 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PDZD7Q9H5P4 517 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 GBA2Q9HCG7 927 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 KLK14Q9P0G3 267 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TRDMT1O14717 391 aaKnown RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 DGKIO75912 1065 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TGM2P21980 687 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 DSG1Q02413 1049 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 PDE1CQ14123 709 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ACAP1Q15027 740 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 DEFB107AQ8IZN7 70 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ATP2A3Q93084 1043 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 C12orf42Q96LP6 360 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF778Q96MU6 729 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 CCDC106Q9BWC9 280 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TRIM4Q9C037 500 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 EBF3Q9H4W6 596 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 CAB39LQ9H9S4 337 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TMEM216Q9P0N5 145 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 RPL26L1Q9UNX3 145 aaKnown RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 NUP205Q92621 2012 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ENDOD1O94919 500 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 TSHRP16473 764 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 GABRB2P47870 512 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 KIZQ2M2Z5 673 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 SOWAHAQ2M3V2 549 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 GRAMD1BQ3KR37 738 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 SPDYAQ5MJ70 313 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF772Q68DY9 489 aaPredicted RBP12.5□□□□□ -0.41
CLIP3-201ENST00000360535 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 LCLAT1Q6UWP7 414 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 OLFML1Q6UWY5 402 aa12.5□□□□□ -0.41
CLIP3-201ENST00000360535 HPS6Q86YV9 775 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms