RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 CNGA2Q16280 664 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 DGUOKQ16854 277 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 ILDR1Q86SU0 546 aaPredicted RBP15.2■□□□□ 0.02
CHD4-201ENST00000357008 GMCL1P1Q8NEA9 526 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 HTR3CQ8WXA8 447 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 TRIM63Q969Q1 353 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 FAM136AQ96C01 138 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PHF21BQ96EK2 531 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PIF1Q9H611 641 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 SCUBE2Q9NQ36 999 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 ATAD3AQ9NVI7 634 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 SERPINH1P50454 418 aaKnown RBP15.2■□□□□ 0.02
CHD4-201ENST00000357008 INAQ16352 499 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 RNF43Q68DV7 783 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 FIG4Q92562 907 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 UGT2B28Q9BY64 529 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PTAR1Q7Z6K3 402 aaPredicted RBP15.2■□□□□ 0.02
CHD4-201ENST00000357008 LINC00116Q8NCU8 138 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 ZSWIM2Q8NEG5 633 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 LRRC39Q96DD0 335 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PARVBQ9HBI1 364 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 CLCN3P51790 818 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 B3GNT6Q6ZMB0 384 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PARK7Q99497 189 aaKnown RBP15.2■□□□□ 0.02
CHD4-201ENST00000357008 UBXN6Q9BZV1 441 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 PRDM4Q9UKN5 801 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 KCNH4Q9UQ05 1017 aa15.2■□□□□ 0.02
CHD4-201ENST00000357008 KRT6AP02538 564 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 KRT6BP04259 564 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 SLC2A4P14672 509 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 KRT6CP48668 564 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 CCNG1P51959 295 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 RPS7P62081 194 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 RRP1BQ14684 758 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 EARS2Q5JPH6 523 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 L3MBTL3Q96JM7 780 aaPredicted RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 ACTR8Q9H981 624 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 AGO4Q9HCK5 861 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 A0A087X0B3 334 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 C15orf38-AP3S2A0A0A6YYH1 394 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 KLRK1P26718 216 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 SLC20A2Q08357 652 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ARPINQ7Z6K5 226 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 EXOC3L1Q86VI1 746 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ZDHHC17Q8IUH5 632 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 RNF148Q8N7C7 305 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 B3GALNT2Q8NCR0 500 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 GPRC5AQ8NFJ5 357 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ACER1Q8TDN7 264 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 UTP6Q9NYH9 597 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 PRG3Q9Y2Y8 225 aaPredicted RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 B3GAT3O94766 335 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 MGAT1P26572 445 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 TKTP29401 623 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 STK32CQ86UX6 486 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 MIB1Q86YT6 1006 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 KATNAL2Q8IYT4 538 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 YIPF2Q9BWQ6 316 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 UBP1Q9NZI7 540 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 VPS4BO75351 444 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 FGFR2P21802 821 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 TTKP33981 857 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 GCLCP48506 637 aaPredicted RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 POU6F1Q14863 301 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ANGEL2Q5VTE6 544 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 ILDR2Q71H61 639 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 NT5MQ9NPB1 228 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 RBM22Q9NW64 420 aaKnown RBP eCLIP15.19■□□□□ 0.027e-6■■■■□ 24.6
CHD4-201ENST00000357008 TRHDEQ9UKU6 1024 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 SIK3Q9Y2K2 1263 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 GNG14A0A1W2PPG7 69 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ATP4AP20648 1035 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 CAP2P40123 477 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ACAP1Q15027 740 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 SH3RF1Q7Z6J0 888 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 UTP15Q8TED0 518 aaKnown RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 RNF145Q96MT1 663 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ACOX2Q99424 681 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ADGRE3Q9BY15 652 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 C6orf62Q9GZU0 229 aaPredicted RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 COPS7BQ9H9Q2 264 aaPredicted RBP15.19■□□□□ 0.02
CHD4-201ENST00000357008 NMRAL1Q9HBL8 299 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 CHST7Q9NS84 486 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 ENOPH1Q9UHY7 261 aa15.19■□□□□ 0.02
CHD4-201ENST00000357008 TSC22D2O75157 780 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 GSTM1P09488 218 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 ETS1P14921 441 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 PIK3R1P27986 724 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 RPA3P35244 121 aaPredicted RBP15.18■□□□□ 0.02
CHD4-201ENST00000357008 CENPAP49450 140 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 CPT1AP50416 773 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 CCDC149Q6ZUS6 474 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 BARX2Q9UMQ3 279 aaPredicted RBP15.18■□□□□ 0.02
CHD4-201ENST00000357008 PDE2AO00408 941 aaPredicted RBP15.18■□□□□ 0.02
CHD4-201ENST00000357008 NET1Q7Z628 596 aaPredicted RBP15.18■□□□□ 0.02
CHD4-201ENST00000357008 RNFT2Q96EX2 444 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 MRPL48Q96GC5 212 aaKnown RBP15.18■□□□□ 0.02
CHD4-201ENST00000357008 DUSP12Q9UNI6 340 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 KLHL20Q9Y2M5 609 aa15.18■□□□□ 0.02
CHD4-201ENST00000357008 H0YC42 278 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms