RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 CDH9Q9ULB4 789 aa9.6□□□□□ -0.87
ATG4A-202ENST00000345734 TRIM17Q9Y577 477 aa9.6□□□□□ -0.87
ATG4A-202ENST00000345734 TTC3P53804 2025 aa9.6□□□□□ -0.87
ATG4A-202ENST00000345734 SGK1O00141 431 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 EIF1AYO14602 144 aaKnown RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 NRP1O14786 923 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 IFNB1P01574 187 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 RARGP13631 454 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 GPC1P35052 558 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TKTL1P51854 596 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PITX1P78337 314 aaPredicted RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 MRPS5P82675 430 aaKnown RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 LMNB2Q03252 620 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 GPS1Q13098 491 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SLC29A2Q14542 456 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TRIP4Q15650 581 aaPredicted RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TTC31Q49AM3 519 aaPredicted RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 BOLA3Q53S33 107 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SPDYCQ5MJ68 293 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 FAM182AQ5T1J6 154 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 HFE2Q6ZVN8 426 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 ZNF280BQ86YH2 543 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 CCDC185Q8N715 623 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 MYCBPAPQ8TBZ2 947 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 KCTD13Q8WZ19 329 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 MYLPFQ96A32 169 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 FAM149B1Q96BN6 582 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TMEM209Q96SK2 561 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 MAK16Q9BXY0 300 aaKnown RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 FAM129AQ9BZQ8 928 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 LRRC4Q9HBW1 653 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PCDH18Q9HCL0 1135 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PHF24Q9UPV7 400 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 NLRC5Q86WI3 1866 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SCN5AQ14524 2016 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 KBTBD13C9JR72 458 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 APOC4-APOC2K7ER74 178 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 DDHD2O94830 711 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 APOC2P02655 101 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 MYZAPP0CAP1 466 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 LMAN1P49257 510 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SLMAPQ14BN4 828 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 ANKRD20A8PQ5CZ79 823 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PPP6R3Q5H9R7 873 aaPredicted RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 EFHC1Q5JVL4 640 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 OTUD1Q5VV17 481 aaPredicted RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 DENND2CQ68D51 928 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 C1orf228Q6PIY5 440 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SLC24A5Q71RS6 500 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 ARCQ7LC44 396 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 UNC45BQ8IWX7 931 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SIX6OS1Q8N1H7 587 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PQLC3Q8N755 202 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 OR10T2Q8NGX3 314 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 PCDH19Q8TAB3 1148 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TEKT4Q8WW24 435 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 RSPH1Q8WYR4 309 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 ATP6V1G3Q96LB4 118 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 RNF157Q96PX1 679 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 ULBP1Q9BZM6 244 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 CDC42EP4Q9H3Q1 356 aaKnown RBP9.59□□□□□ -0.87
ATG4A-202ENST00000345734 TMLHEQ9NVH6 421 aa9.59□□□□□ -0.87
ATG4A-202ENST00000345734 SYNJ2BP-COX16A0A087WUM0 186 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 M0QZQ0 153 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 DNALI1O14645 258 aaPredicted RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 INPPL1O15357 1258 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 RIPK2O43353 540 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 NBNO60934 754 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 DAB1O75553 588 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 CYP11A1P05108 521 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 NUDT17P0C025 328 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 PCSK2P16519 638 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 PCSK1P29120 753 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 IRS1P35568 1242 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 MATKP42679 507 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 SULT1E1P49888 294 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 CDK7P50613 346 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 NRLP54845 237 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 EIF3EP60228 445 aaKnown RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 YWHAZP63104 245 aaKnown RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 CAV1Q03135 178 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 IFFO1Q0D2I5 559 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 GPNMBQ14956 572 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 PDK2Q15119 407 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 SKIDA1Q1XH10 827 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 DCAF6Q58WW2 860 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 ERMARDQ5T6L9 678 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 SYPL2Q5VXT5 272 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 HIBCHQ6NVY1 386 aaPredicted RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 DCLRE1AQ6PJP8 1040 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 GLB1LQ6UWU2 654 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 LRRC8DQ7L1W4 858 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 LRRTM3Q86VH5 581 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 ZC3H18Q86VM9 953 aaKnown RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 SPATA18Q8TC71 538 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 DHX35Q9H5Z1 703 aaKnown RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 COX16Q9P0S2 106 aa9.58□□□□□ -0.88
ATG4A-202ENST00000345734 LAMA2P24043 3122 aaKnown RBP9.58□□□□□ -0.88
ATG4A-202ENST00000345734 VWA8A3KMH1 1905 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms