RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 CLEC20AQ6ZU45 233 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 RNF139Q8WU17 664 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 C10orf82Q8WW14 230 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 DUSP16Q9BY84 665 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 TSPYL2Q9H2G4 693 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 INPP5FQ9Y2H2 1132 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CDY2AQ9Y6F7 541 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 C5orf42Q9H799 3197 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CHUKO15111 745 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 MGRN1O60291 552 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 NCAM1P13591 858 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 MGAT1P26572 445 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 PSMB4P28070 264 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CPT1AP50416 773 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 MRPS5P82675 430 aaKnown RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 EFHC1Q5JVL4 640 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ZCCHC23Q6ZST2 131 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ZDHHC17Q8IUH5 632 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 C3orf58Q8NDZ4 430 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 STK32AQ8WU08 396 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 APOPT1Q96IL0 206 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 APOL2Q9BQE5 337 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 PRDM12Q9H4Q4 367 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CRTAC1Q9NQ79 661 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 FBXO6Q9NRD1 293 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ST3GAL5Q9UNP4 418 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 RNF103O00237 685 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 TNPO2O14787 897 aaKnown RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 POMCP01189 267 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ABCG1P45844 678 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ACADSBP45954 432 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 CRYBB1P53674 252 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ADAM17P78536 824 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ZBTB16Q05516 673 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 PPP2R5DQ14738 602 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 MORN1Q5T089 497 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 TTC39BQ5VTQ0 682 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 GBP7Q8N8V2 638 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 PGBD4Q96DM1 585 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 P2RY11Q96G91 374 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 SIGLEC10Q96LC7 697 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 TACO1Q9BSH4 297 aaKnown RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 C11orf84Q9BUA3 381 aaPredicted RBP10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ANLNQ9NQW6 1124 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 GDAP2Q9NXN4 497 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 ZFP69BQ9UJL9 534 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 FZD10Q9ULW2 581 aa10.68□□□□□ -0.7
LIMA1-201ENST00000341247 XPO1O14980 1071 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 KRT37O76014 449 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 SNRPAP09012 282 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 TROVE2P10155 538 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 YY1P25490 414 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PNPLA4P41247 253 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 SERPINB4P48594 390 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 CDC42EP1Q00587 391 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 SLC25A52Q3SY17 297 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 OTUD1Q5VV17 481 aaPredicted RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 C16orf46Q6P387 395 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PID1Q7Z2X4 250 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 NDUFAF2Q8N183 169 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 CENPIQ92674 756 aaPredicted RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 HSFY1Q96LI6 401 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PLCD4Q9BRC7 762 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PPCSQ9HAB8 311 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 NMRK2Q9NPI5 230 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 UBP1Q9NZI7 540 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 SMAPO00193 183 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 EEF2KO00418 725 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 UNC5CO95185 931 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 FAM200BP0CF97 657 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 KCNE1P15382 129 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 NUMBP49757 651 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 ZNF276Q8N554 614 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 AGAP11Q8TF27 550 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 USP6NLQ92738 828 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PCED1BQ96HM7 432 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 QKIQ96PU8 341 aaKnown RBP eCLIP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 EBNA1BP2Q99848 306 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 HEY2Q9UBP5 337 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 FAM237BA0A1B0GVD1 139 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 CFAP73A6NFT4 308 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 M0QZ92 97 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 RPSAP08865 295 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 TMPRSS15P98073 1019 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PURAQ00577 322 aaKnown RBP10.67□□□□□ -0.7
LIMA1-201ENST00000341247 STKLD1Q8NE28 680 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 SYT15Q9BQS2 421 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 DDIT4Q9NX09 232 aa10.67□□□□□ -0.7
LIMA1-201ENST00000341247 PDCD11Q14690 1871 aaKnown RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 I6L893 689 aaPredicted RBP10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TM9SF1O15321 606 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 C1QAP02745 245 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 AXLP30530 894 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 BRCC3P46736 316 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 NEK3P51956 506 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 NBPF20Q3BBV1 942 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 ACCSLQ4AC99 568 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 TTC7BQ86TV6 843 aa10.66□□□□□ -0.7
LIMA1-201ENST00000341247 GSDMBQ8TAX9 411 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms