RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IQCKQ8N0W5 287 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ABRAQ8N0Z2 381 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 STKLD1Q8NE28 680 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 LNX1Q8TBB1 728 aaPredicted RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 TRAPPC9Q96Q05 1148 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 MTG1Q9BT17 334 aaPredicted RBP8.91□□□□□ -0.98
RTN3-202ENST00000339997 OSBPL7Q9BZF2 842 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 NT5MQ9NPB1 228 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SLC17A7Q9P2U7 560 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 LIMD1Q9UGP4 676 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 EGFL7Q9UHF1 273 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 ZMYM5Q9UJ78 669 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 NR2E1Q9Y466 385 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 PCDHGC5Q9Y5F6 944 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 PCDHA3Q9Y5H8 950 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 SNX8Q9Y5X2 465 aa8.91□□□□□ -0.98
RTN3-202ENST00000339997 HEATR9A2RTY3 570 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 TRIM43BA6NCK2 446 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 ANKRD63C9JTQ0 380 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 MRASO14807 208 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 TNFRSF21O75509 655 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 ME2P23368 584 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 FASP25445 335 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 OR1G1P47890 313 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 CYP24A1Q07973 514 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 ARMC4Q5T2S8 1044 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 KCNT2Q6UVM3 1135 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 OR6J1Q8NGC5 347 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 DNAJB14Q8TBM8 379 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 LRRC40Q9H9A6 602 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 DPP3Q9NY33 737 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 TRIM13O60858 407 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 CYP2C9P11712 490 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 MIPP30301 263 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 GTF2A2P52657 109 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 CYP4F2P78329 520 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 CYP4F3Q08477 520 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 FASTKQ14296 549 aaKnown RBP8.9□□□□□ -0.98
RTN3-202ENST00000339997 ZNF470Q6ECI4 717 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 DHFR2Q86XF0 187 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 TMEM139Q8IV31 216 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 RTKN2Q8IZC4 609 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.9□□□□□ -0.983e-7■■■□□ 19.1
RTN3-202ENST00000339997 FBXO30Q8TB52 745 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 BAP1Q92560 729 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 CEP44Q9C0F1 390 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 TRIM45Q9H8W5 580 aaPredicted RBP8.9□□□□□ -0.98
RTN3-202ENST00000339997 ABCB10Q9NRK6 738 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 H2AFY2Q9P0M6 372 aaPredicted RBP8.9□□□□□ -0.98
RTN3-202ENST00000339997 ZNF70Q9UC06 446 aaPredicted RBP8.9□□□□□ -0.98
RTN3-202ENST00000339997 POLLQ9UGP5 575 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 SEPT3Q9UH03 358 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 VANGL2Q9ULK5 521 aa8.9□□□□□ -0.98
RTN3-202ENST00000339997 PRRC2BQ5JSZ5 2229 aaKnown RBP8.9□□□□□ -0.98
RTN3-202ENST00000339997 DPPA5A6NC42 116 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 C9JVG2 144 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 P4HA2O15460 535 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 TADA2AO75478 443 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 NNMTP40261 264 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 SYTL3Q4VX76 610 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 ANGEL2Q5VTE6 544 aaKnown RBP8.9□□□□□ -0.99
RTN3-202ENST00000339997 ZNF467Q7Z7K2 595 aaPredicted RBP8.9□□□□□ -0.99
RTN3-202ENST00000339997 SLFN11Q7Z7L1 901 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 BPIFB6Q8NFQ5 453 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 SPPL2AQ8TCT8 520 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 PHF12Q96QT6 1004 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 RIBC2Q9H4K1 309 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 PPCSQ9HAB8 311 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 THAP1Q9NVV9 213 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 NMRK1Q9NWW6 199 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 CLCA2Q9UQC9 943 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 SALL1Q9NSC2 1324 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 MON2Q7Z3U7 1717 aa8.9□□□□□ -0.99
RTN3-202ENST00000339997 PRR5-ARHGAP8B1AHC4 643 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 E7ENQ6 273 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 OGTO15294 1046 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 TM9SF1O15321 606 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 ADCY6O43306 1168 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 AHCYL1O43865 530 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 AKAP5P24588 427 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 WEE1P30291 646 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 CENPAP49450 140 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 ARHGAP8P85298 464 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 PTPN11Q06124 597 aaPredicted RBP8.89□□□□□ -0.99
RTN3-202ENST00000339997 ARHGEF7Q14155 803 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 PDK3Q15120 406 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 ALFQ53S48 1182 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 GPR107Q5VW38 600 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 ILDR2Q71H61 639 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 DDX53Q86TM3 631 aaKnown RBP8.89□□□□□ -0.99
RTN3-202ENST00000339997 ZNF677Q86XU0 584 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 IRF2BP1Q8IU81 584 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 CCNJLQ8IV13 435 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 SP8Q8IXZ3 490 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 FITM2Q8N6M3 262 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 APOPT1Q96IL0 206 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 TPD52L3Q96J77 140 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 ZNF512BQ96KM6 892 aaPredicted RBP8.89□□□□□ -0.99
RTN3-202ENST00000339997 PCDH9Q9HC56 1237 aa8.89□□□□□ -0.99
RTN3-202ENST00000339997 MID1IP1Q9NPA3 183 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms