RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 COX4I2Q96KJ9 171 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 S100A13Q99584 98 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 NEXMIFQ5QGS0 1516 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 A0A0B4J269 797 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 FBXO21O94952 628 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 TUBB3Q13509 450 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 EPHA7Q15375 998 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 TCEAL5Q5H9L2 206 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 GRTP1Q5TC63 336 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 SYTL1Q8IYJ3 562 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 GTF3C2Q8WUA4 911 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 MOSPD1Q9UJG1 213 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 LOC102724428A0A0B4J2F2 783 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 RPL3P39023 403 aaKnown RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 SIK1P57059 783 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 C5orf22Q49AR2 442 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 TMIEQ8NEW7 156 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 AENQ8WTP8 325 aaKnown RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 VCPIP1Q96JH7 1222 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 SPATA33Q96N06 139 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 DDHD2O94830 711 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 CAMK2GQ13555 558 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L15C9J2P7 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L13C9JLJ4 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L11C9JVI0 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L18D6R9N7 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L22D6RA61 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L17D6RBQ6 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L19D6RCP7 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L20D6RJB6 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ARL4DP49703 201 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L24Q0WX57 530 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 USP17L6PQ6QN14 398 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 EIF3MQ7L2H7 374 aaKnown RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 CD302Q8IX05 232 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ITFG1Q8TB96 612 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ZKSCAN4Q969J2 545 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 DSN1Q9H410 356 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 CROTQ9UKG9 612 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 EVPLQ92817 2033 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 DLG5Q8TDM6 1919 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ZNF24P17028 368 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 CDK16Q00536 496 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 LAYNQ6UX15 382 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 PRR23CQ6ZRP0 262 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 CXXC5Q7LFL8 322 aaKnown RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 SLC30A5Q8TAD4 765 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ZNF671Q8TAW3 534 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 TBCBQ99426 244 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 KLHL1Q9NR64 748 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 ARHGAP28Q9P2N2 729 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 MATN2O00339 956 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 UNC5CO95185 931 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 GP5P40197 560 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 COPZ1P61923 177 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 POLD3Q15054 466 aaPredicted RBP14.62□□□□□ -0.07
COL7A1-201ENST00000328333 C10orf53Q8N6V4 93 aa14.62□□□□□ -0.07
COL7A1-201ENST00000328333 HPGDP15428 266 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 FASTKQ14296 549 aaKnown RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 SNIP1Q8TAD8 396 aaKnown RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 PHF20Q9BVI0 1012 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 DLC1Q96QB1 1528 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 SERPIND1P05546 499 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 CPA3P15088 417 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 MGAT5Q09328 741 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 XKR3Q5GH77 459 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 CHSY1Q86X52 802 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 CLUHO75153 1309 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 KPNA1P52294 538 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 AGKQ53H12 422 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 SYTL5Q8TDW5 730 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 LNPEPQ9UIQ6 1025 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 REEP2Q9BRK0 252 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 CMTM6Q9NX76 183 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 ZNF112Q9UJU3 913 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 F5H423 210 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 PRKAB2O43741 272 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 ZFP69Q49AA0 526 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 RAD9BQ6WBX8 426 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 ZNF438Q7Z4V0 828 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 PACS2Q86VP3 889 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 TMEM2Q9UHN6 1383 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 ERI2A8K979 691 aaKnown RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 FAM187BQ17R55 369 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 RNASE11Q8TAA1 199 aaKnown RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 BLOC1S5Q8TDH9 187 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 SLITRK1Q96PX8 696 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 RHOBTB2Q9BYZ6 727 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 IRX2Q9BZI1 471 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 ROGDIQ9GZN7 287 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 NUP214P35658 2090 aaPredicted RBP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 AP1G2O75843 785 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 FMR1Q06787 632 aaKnown RBP eCLIP14.61□□□□□ -0.07
COL7A1-201ENST00000328333 SLC38A2Q96QD8 506 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 CLN6Q9NWW5 311 aa14.61□□□□□ -0.07
COL7A1-201ENST00000328333 H3BN98 237 aa14.6□□□□□ -0.07
COL7A1-201ENST00000328333 CHRM3P20309 590 aa14.6□□□□□ -0.07
COL7A1-201ENST00000328333 EZH2Q15910 746 aaKnown RBP14.6□□□□□ -0.07
COL7A1-201ENST00000328333 ACAD10Q6JQN1 1059 aa14.6□□□□□ -0.07
COL7A1-201ENST00000328333 ZHX1-C8orf76Q96EF9 292 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms