RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ZNF862O60290 1169 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 LCA5LO95447 670 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 PSMB9P28065 219 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CCT8P50990 548 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 BST2Q10589 180 aaKnown RBP13.16□□□□□ -0.3
COL3A1-201ENST00000304636 DGUOKQ16854 277 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 TMC5Q6UXY8 1006 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 MAP4K3Q8IVH8 894 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 FAM210AQ96ND0 272 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 SEPHS2Q99611 448 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 ASTN1O14525 1302 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 KDELR1P24390 212 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 ARHGEF6Q15052 776 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 ATP6V0D2Q8N8Y2 350 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 FAM81AQ8TBF8 368 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 TMEM39BQ9GZU3 492 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 MOSPD1Q9UJG1 213 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 PAEPP09466 180 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CAP2P40123 477 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 PRIM2P49643 509 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CASP5P51878 434 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 NIPA1Q7RTP0 329 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CAMK1DQ8IU85 385 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 FAM71AQ8IYT1 594 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 TSPAN14Q8NG11 270 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CYP2W1Q8TAV3 490 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 ZSCAN18Q8TBC5 510 aaPredicted RBP13.16□□□□□ -0.3
COL3A1-201ENST00000304636 GANCQ8TET4 914 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 KATNAL1Q9BW62 490 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 CINPQ9BW66 212 aaPredicted RBP13.16□□□□□ -0.3
COL3A1-201ENST00000304636 HMG20AQ9NP66 347 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 PXMP2Q9NR77 195 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 POLIQ9UNA4 740 aa13.16□□□□□ -0.3
COL3A1-201ENST00000304636 RRN3P2A6NIE6 340 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SNTNA6NMZ2 147 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 ITGAVP06756 1048 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SERPINA6P08185 405 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TMEM62Q0P6H9 643 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 NFIAQ12857 509 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MAMLD1Q13495 774 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MFSD5Q6N075 450 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 CYP2R1Q6VVX0 501 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 C1orf186Q6ZWK4 172 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 CHSY1Q86X52 802 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SEMA6AQ9H2E6 1030 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TBC1D13Q9NVG8 400 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 NCF1BA6NI72 391 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 NCF1CA8MVU1 366 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 PEX1O43933 1283 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 NCF1P14598 390 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MIPP30301 263 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 KRT20P35900 424 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 PPP3CAQ08209 521 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 VAC14Q08AM6 782 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 AMHR2Q16671 573 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 OTUD3Q5T2D3 398 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TMC7Q7Z402 723 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SETD9Q8NE22 299 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 KCNMB3Q9NPA1 279 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 CNGB3Q9NQW8 809 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 BARX2Q9UMQ3 279 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SPATA31D1Q6ZQQ2 1576 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 FAM95CA0A1B0GW59 222 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 F8VP50 259 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 CYP3A4P08684 503 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 FLT3P36888 993 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MARSP56192 900 aaKnown RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 KCTD21Q4G0X4 260 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TRABD2AQ86V40 505 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 IRF2BP1Q8IU81 584 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 EID3Q8N140 333 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 OR8H2Q8N162 312 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 RORBQ92753 470 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 CCDC28BQ9BUN5 200 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 XPNPEP3Q9NQH7 507 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 ETNK2Q9NVF9 386 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 NMRK1Q9NWW6 199 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 RRN3Q9NYV6 651 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 USE1Q9NZ43 259 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 C6orf203Q9P0P8 240 aaPredicted RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MROH1Q8NDA8 1641 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 VPS4BO75351 444 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MED26O95402 600 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 GLP2RO95838 553 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 ETS1P14921 441 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TRIM25Q14258 630 aaKnown RBP13.15□□□□□ -0.3
COL3A1-201ENST00000304636 ZNF484Q5JVG2 852 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 SCARA3Q6AZY7 606 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 KCNQ5Q9NR82 932 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 TRHDEQ9UKU6 1024 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 MEGF6O75095 1541 aa13.15□□□□□ -0.3
COL3A1-201ENST00000304636 PXDNQ92626 1479 aa13.15□□□□□ -0.31
COL3A1-201ENST00000304636 EML1O00423 815 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 TPP1O14773 563 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 COX4I1P13073 169 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 ACO1P21399 889 aaKnown RBP13.14□□□□□ -0.31
COL3A1-201ENST00000304636 DNAJB2P25686 324 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 MARCKSL1P49006 195 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 PKNOX1P55347 436 aa13.14□□□□□ -0.31
COL3A1-201ENST00000304636 BNIP1Q12981 228 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms