RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZBTB16Q05516 673 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 NFIL3Q16649 462 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 KMT5BQ4FZB7 885 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 C1orf220Q5T0J3 134 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 PPP1R26Q5T8A7 1209 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 DENND1CQ8IV53 801 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 FAM217AQ8IXS0 508 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 GRAMD1CQ8IYS0 662 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 OR2T3Q8NH03 318 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 C1orf216Q8TAB5 229 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 WFIKKN2Q8TEU8 576 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 CCDC47Q96A33 483 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 PAGE5Q96GU1 130 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 HEXIM2Q96MH2 286 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 SCUBE2Q9NQ36 999 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 PLA2G4CQ9UP65 541 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 FNDC3AQ9Y2H6 1198 aaKnown RBP15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 CELSR3Q9NYQ7 3312 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 ASXL3Q9C0F0 2248 aa15.47■□□□□ 0.07
CCDC88B-201ENST00000301897 NUMA1Q14980 2115 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 ACTN4O43707 911 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 DKK1O94907 266 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 C7P10643 843 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 PRKCHP24723 683 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 RPL13P26373 211 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 GTF2H1P32780 548 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 HARS2P49590 506 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 CAMK2GQ13555 558 aaPredicted RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 INAVAQ3KP66 663 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 MPPE1Q53F39 396 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 C19orf48Q6RUI8 117 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 RBBP8NLQ8NC74 664 aaPredicted RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 SNX19Q92543 992 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 LHX5Q9H2C1 402 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 IL21RQ9HBE5 538 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 APOBEC3GQ9HC16 384 aaKnown RBP15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 TMEM8AQ9HCN3 771 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 SERTAD1Q9UHV2 236 aa15.46■□□□□ 0.07
CCDC88B-201ENST00000301897 HELZ2Q9BYK8 2649 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 A0A1B0GVT2 93 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 SLC12A8A0AV02 714 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 DFNA5O60443 496 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 LATS1O95835 1130 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 ZSCAN22P10073 491 aaPredicted RBP15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 NR2F2P24468 414 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 GRIA4P48058 902 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 GCLMP48507 274 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 YWHAGP61981 247 aaKnown RBP eCLIP15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 BNC1Q01954 994 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 COL28A1Q2UY09 1125 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 FNDC3BQ53EP0 1204 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 RAB41Q5JT25 222 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 FAM186BQ8IYM0 893 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 MDM1Q8TC05 714 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 TAS1R2Q8TE23 839 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 GOLGA1Q92805 767 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 IGSF8Q969P0 613 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 P2RY11Q96G91 374 aa15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 HBS1LQ9Y450 684 aaKnown RBP15.45■□□□□ 0.06
CCDC88B-201ENST00000301897 E9PAM4 449 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TNFSF14O43557 240 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 PCDHGA12O60330 932 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ZBED1O96006 694 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TRIM49P0CI25 452 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TRIM49CP0CI26 452 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 PSMC2P35998 433 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 GRK6P43250 576 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 CSNK1EP49674 416 aaKnown RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TRIP4Q15650 581 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TTC31Q49AM3 519 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ARHGAP17Q68EM7 881 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 KRT39Q6A163 491 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 PM20D1Q6GTS8 502 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 FAM124AQ86V42 546 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ZNF557Q8N988 423 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ANKRD52Q8NB46 1076 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TMEM176AQ96HP8 235 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 IRX2Q9BZI1 471 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 BTBD1Q9H0C5 482 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 TOR4AQ9NXH8 423 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ANKRD6Q9Y2G4 727 aa15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.44■□□□□ 0.06
CCDC88B-201ENST00000301897 STX10O60499 249 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SEMA4FO95754 770 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 F13A1P00488 732 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 ATP5BP06576 529 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 ATXN1LP0C7T5 689 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 HOXD9P28356 352 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 CCT8P50990 548 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 BCAT1P54687 386 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 PPP3CAQ08209 521 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SFSWAPQ12872 951 aaKnown RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 ZNF394Q53GI3 561 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 SOWAHCQ53LP3 525 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 FOXD4L5Q5VV16 416 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 TMEM215Q68D42 235 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 PIGZQ86VD9 579 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 CACUL1Q86Y37 369 aa15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 DDX51Q8N8A6 666 aaKnown RBP eCLIP15.43■□□□□ 0.06
CCDC88B-201ENST00000301897 PDCD7Q8N8D1 485 aaKnown RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms