RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 MMP8P22894 467 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 PSMA2P25787 234 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 TCF7P36402 384 aaPredicted RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 CCR10P46092 362 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 ORC1Q13415 861 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 CEACAM7Q14002 265 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 SLC9A4Q6AI14 798 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 IFNLR1Q8IU57 520 aaPredicted RBP13.89□□□□□ -0.19
SKA3-201ENST00000298260 KBTBD7Q8WVZ9 684 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 ATXN7L3BQ96GX2 97 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 OSBPL6Q9BZF3 934 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 POPDC2Q9HBU9 364 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 ARHGAP26Q9UNA1 814 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 TRIM17Q9Y577 477 aa13.89□□□□□ -0.19
SKA3-201ENST00000298260 COL24A1Q17RW2 1714 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 WDR64B1ANS9 1081 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 SEC24DO94855 1032 aaPredicted RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 EIF2AK2P19525 551 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 NFKBIAP25963 317 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 YWHABP31946 246 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 CDK9P50750 372 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 KLF10Q13118 480 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 XKR9Q5GH70 373 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 C6orf183Q5T699 404 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 SH3PXD2AQ5TCZ1 1133 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 TMEM198Q66K66 360 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 UNC5AQ6ZN44 842 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 PHF13Q86YI8 300 aaPredicted RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 RAVER1Q8IY67 606 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 LZTR1Q8N653 840 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 FAM110BQ8TC76 370 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ATP6V1E2Q96A05 226 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 CMTM5Q96DZ9 223 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 SLC29A1Q99808 456 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 NAA50Q9GZZ1 169 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 COQ10BQ9H8M1 238 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 PLGRKTQ9HBL7 147 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 C6orf203Q9P0P8 240 aaPredicted RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 SSX2IPQ9Y2D8 614 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 LRCH4O75427 683 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ATE1O95260 518 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ABCG1P45844 678 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 PHKA2P46019 1235 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 PGGT1BP53609 377 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 IL23RQ5VWK5 629 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 CAND1Q86VP6 1230 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 TMEM130Q8N3G9 435 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ZNF781Q8N8C0 355 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 DQX1Q8TE96 717 aaKnown RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 DCAF4Q8WV16 495 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 EME1Q96AY2 570 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ZBTB45Q96K62 511 aaPredicted RBP13.88□□□□□ -0.19
SKA3-201ENST00000298260 MFSD14AQ96MC6 490 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 NRDE2Q9H7Z3 1164 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 COG4Q9H9E3 785 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 KCND2Q9NZV8 630 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ZNF541Q9H0D2 1346 aa13.88□□□□□ -0.19
SKA3-201ENST00000298260 ZNF195O14628 629 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 ZBTB11O95625 1053 aaPredicted RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 HLA-DOAP06340 250 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 OCM2P0CE71 109 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 OCMP0CE72 109 aaPredicted RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 KDELR1P24390 212 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 STAT2P52630 851 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 NLRP11P59045 1033 aaKnown RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 CUL2Q13617 745 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 DOK7Q18PE1 504 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 NANOGP8Q6NSW7 305 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 KCNT2Q6UVM3 1135 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 TICAM1Q8IUC6 712 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 KCTD6Q8NC69 237 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 C12orf43Q96C57 262 aaKnown RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 HEPHQ9BQS7 1158 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 TMEM79Q9BSE2 394 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 KCNH7Q9NS40 1196 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 MYO18AQ92614 2054 aaKnown RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 A0A1W2PPW3 197 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 TESPA1A2RU30 521 aaPredicted RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 H7C0C1 242 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 ATP5OP48047 213 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 PDAP1Q13442 181 aaKnown RBP13.87□□□□□ -0.19
SKA3-201ENST00000298260 KCNJ11Q14654 390 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 PCLAFQ15004 111 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 DDI1Q8WTU0 396 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 RCN3Q96D15 328 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 NEURL2Q9BR09 285 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 KMT5AQ9NQR1 393 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 GGA1Q9UJY5 639 aa13.87□□□□□ -0.19
SKA3-201ENST00000298260 ARHGEF37A1IGU5 675 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 SPDYE2BA6NHP3 402 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 PSMD12O00232 456 aaPredicted RBP13.86□□□□□ -0.19
SKA3-201ENST00000298260 LSM1O15116 133 aaKnown RBP13.86□□□□□ -0.19
SKA3-201ENST00000298260 PMM2O15305 246 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 SPDYE6P0CI01 402 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 IL1R1P14778 569 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 ZFXP17010 805 aaPredicted RBP13.86□□□□□ -0.19
SKA3-201ENST00000298260 ZNF23P17027 643 aa13.86□□□□□ -0.19
SKA3-201ENST00000298260 SLC25A11Q02978 314 aaKnown RBP13.86□□□□□ -0.19
SKA3-201ENST00000298260 C1QBPQ07021 282 aaKnown RBP13.86□□□□□ -0.19
SKA3-201ENST00000298260 BNIP3Q12983 259 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms