RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PAAF1Q9BRP4 392 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SLC4A5Q9BY07 1137 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 CAB39LQ9H9S4 337 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.16■□□□□ 0.344e-6■■□□□ 12.5
VPS54-201ENST00000272322 KLHL8Q9P2G9 620 aaPredicted RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 CPSF2Q9P2I0 782 aaKnown RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 KPNB1Q14974 876 aaKnown RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 DLG2Q15700 870 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 IL31Q6EBC2 164 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SIX6OS1Q8N1H7 587 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 RNF34Q969K3 372 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 ZNF570Q96NI8 536 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 RAB3IPQ96QF0 476 aaPredicted RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 CADM1Q9BY67 442 aaKnown RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 TXNDC16Q9P2K2 825 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 B2RBV5 119 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 CHADO15335 359 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 USP17L7P0C7H9 530 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 RASA2Q15283 850 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SLC45A4Q5BKX6 768 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 OR52K1Q8NGK4 314 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 P2RY11Q96G91 374 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SNX27Q96L92 541 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 SIGLEC10Q96LC7 697 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 MYCBPQ99417 103 aaPredicted RBP17.16■□□□□ 0.34
VPS54-201ENST00000272322 KCNK13Q9HB14 408 aa17.16■□□□□ 0.34
VPS54-201ENST00000272322 HMX2A2RU54 273 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 NRP1O14786 923 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ITM2AO43736 263 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 RFPL1O75677 317 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ZMPSTE24O75844 475 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 CCNB1P14635 433 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 BST2Q10589 180 aaKnown RBP17.15■□□□□ 0.34
VPS54-201ENST00000272322 NCBP2-AS2Q69YL0 99 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 TFB1MQ8WVM0 346 aaKnown RBP17.15■□□□□ 0.34
VPS54-201ENST00000272322 FAM161BQ96MY7 647 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 RPS6KL1Q9Y6S9 549 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 C2CD2LO14523 706 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 KRT36O76013 467 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ENDOD1O94919 500 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 NCAM1P13591 858 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ETV4P43268 484 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 WLSQ5T9L3 541 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ZNF534Q76KX8 674 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 WDR60Q8WVS4 1066 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 L3MBTL3Q96JM7 780 aaPredicted RBP17.15■□□□□ 0.34
VPS54-201ENST00000272322 CYP4F11Q9HBI6 524 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 TKTL1P51854 596 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 LRRC36Q1X8D7 754 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 ANKRD52Q8NB46 1076 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 GAD1Q99259 594 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 DHRS4Q9BTZ2 278 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 MAN1C1Q9NR34 630 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 SYBUQ9NX95 663 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 INPP5FQ9Y2H2 1132 aa17.15■□□□□ 0.34
VPS54-201ENST00000272322 TPP1O14773 563 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 TM9SF1O15321 606 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 KRT38O76015 456 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 CCND1P24385 295 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 DUSP28Q4G0W2 176 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 SPATA6LQ8N4H0 392 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 CCDC124Q96CT7 223 aaKnown RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 EBNA1BP2Q99848 306 aaKnown RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 ATXN3LQ9H3M9 355 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 ANLNQ9NQW6 1124 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 ARHGEF4Q9NR80 690 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 PIGVQ9NUD9 493 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 TTC3P53804 2025 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 YJEFN3A6XGL0 299 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 E7ENQ6 273 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 DLDP09622 509 aaKnown RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 CACNA2D1P54289 1103 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 BCAT1P54687 386 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 DEUP1Q05D60 604 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 CACNB2Q08289 660 aaPredicted RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 FAM187BQ17R55 369 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 N4BP2L1Q5TBK1 243 aaPredicted RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 OLFML2BQ68BL8 750 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 TREML1Q86YW5 311 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 CDKL3Q8IVW4 592 aaPredicted RBP17.14■□□□□ 0.33
VPS54-201ENST00000272322 B3GALNT2Q8NCR0 500 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 AGAP2Q99490 1192 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 ULBP1Q9BZM6 244 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 ADAMTS10Q9H324 1103 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 KRT82Q9NSB4 513 aa17.14■□□□□ 0.33
VPS54-201ENST00000272322 MYBPHLA2RUH7 354 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 LILRA4P59901 499 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 ACAP1Q15027 740 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 SNX17Q15036 470 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 LGSNQ5TDP6 509 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 SLC9A4Q6AI14 798 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 GSDMBQ8TAX9 411 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 RNF139Q8WU17 664 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 OXNAD1Q96HP4 312 aaPredicted RBP17.13■□□□□ 0.33
VPS54-201ENST00000272322 THTPAQ9BU02 230 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 LRMDAQ9H2I8 198 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 VTA1Q9NP79 307 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 TAS2R1Q9NYW7 299 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 PLLPQ9Y342 182 aa17.13■□□□□ 0.33
VPS54-201ENST00000272322 DNAJC6O75061 913 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms