RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 WDCPQ9H6R7 721 aa15.83■□□□□ 0.13
SF3B4-201ENST00000271628 ARHGEF4Q9NR80 690 aa15.83■□□□□ 0.13
SF3B4-201ENST00000271628 DTLQ9NZJ0 730 aa15.83■□□□□ 0.13
SF3B4-201ENST00000271628 DNAJB4Q9UDY4 337 aa15.83■□□□□ 0.13
SF3B4-201ENST00000271628 ADAM28Q9UKQ2 775 aa15.83■□□□□ 0.13
SF3B4-201ENST00000271628 PRG3Q9Y2Y8 225 aaPredicted RBP15.83■□□□□ 0.13
SF3B4-201ENST00000271628 NLRC5Q86WI3 1866 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 E7ESA3 106 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 GOLGA8MH3BSY2 632 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 CREB3O43889 395 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 PHBP35232 272 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 HCAR3P49019 387 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 SLC10A2Q12908 348 aaPredicted RBP15.83■□□□□ 0.12
SF3B4-201ENST00000271628 CBLBQ13191 982 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 SLC39A12Q504Y0 691 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 SWT1Q5T5J6 900 aaKnown RBP15.83■□□□□ 0.12
SF3B4-201ENST00000271628 ANKRD22Q5VYY1 191 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 KCNT2Q6UVM3 1135 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 PDZD4Q76G19 769 aaPredicted RBP15.83■□□□□ 0.12
SF3B4-201ENST00000271628 KDM4CQ9H3R0 1056 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 RAB6BQ9NRW1 208 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 ABCC13Q9NSE7 274 aa15.83■□□□□ 0.12
SF3B4-201ENST00000271628 EEF2KO00418 725 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 GCATO75600 419 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 TSHRP16473 764 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 CXCR3P49682 368 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 VSTM1Q6UX27 236 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 RFX8Q6ZV50 586 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 ANKS4BQ8N8V4 417 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 ADAM32Q8TC27 787 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 TFB1MQ8WVM0 346 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 ATXN2LQ8WWM7 1075 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 CASD1Q96PB1 797 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 OLFM3Q96PB7 478 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 QKIQ96PU8 341 aaKnown RBP eCLIP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 SELENOSQ9BQE4 189 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 MRPL9Q9BYD2 267 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 RNF208Q9H0X6 261 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 INTS9Q9NV88 658 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 RAD54BQ9Y620 910 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 TNFRSF10BO14763 440 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 PQBP1O60828 265 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 DGKIO75912 1065 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 MAP3K6O95382 1288 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 ATP2A2P16615 1042 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 SLC5A3P53794 718 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 IFI35P80217 286 aaPredicted RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 KCNJ11Q14654 390 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 PAFAH1B3Q15102 231 aaKnown RBP15.82■□□□□ 0.12
SF3B4-201ENST00000271628 EDEM1Q92611 657 aa15.82■□□□□ 0.12
SF3B4-201ENST00000271628 PATJQ8NI35 1801 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 PPP1R12AO14974 1030 aaPredicted RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 RASSF9O75901 435 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 TMEM63AO94886 807 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 GTF2A1P52655 376 aaPredicted RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 NRLP54845 237 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 FASTKD3Q14CZ7 662 aaKnown RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 PDK1Q15118 436 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 VARS2Q5ST30 1063 aaKnown RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 ANKRD33Q7Z3H0 272 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 ATP11CQ8NB49 1132 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 CCDC197Q8NCU1 140 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 VPS37BQ9H9H4 285 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 ETNK2Q9NVF9 386 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 LGALS13Q9UHV8 139 aa15.81■□□□□ 0.12
SF3B4-201ENST00000271628 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 COL4A4P53420 1690 aaPredicted RBP15.81■□□□□ 0.12
SF3B4-201ENST00000271628 EXOC1LA0A1B0GW35 172 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 TCRBV7S3A2A0A539 114 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 OR6C75A6NL08 312 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 STK10O94804 968 aaKnown RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 CYP2C18P33260 490 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 MAGEA6P43360 314 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 YWHAGP61981 247 aaKnown RBP eCLIP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 PPARDQ03181 441 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 ELAVL2Q12926 359 aaKnown RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 SEMA3BQ13214 749 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 DPYSQ14117 519 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 MRPL58Q14197 206 aaKnown RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 MTFR1Q15390 333 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 FNBP1LQ5T0N5 605 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 BTBD8Q5XKL5 378 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 TDRPQ86YL5 185 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 NPAS4Q8IUM7 802 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 PALM2Q8IXS6 379 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 VPS52Q8N1B4 723 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 TAB3Q8N5C8 712 aaPredicted RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 SCAMP5Q8TAC9 235 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 HTR3CQ8WXA8 447 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 CCT6BQ92526 530 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 ARHGEF2Q92974 986 aaKnown RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 TMEM175Q9BSA9 504 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 TKTL2Q9H0I9 626 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 ABI2Q9NYB9 513 aaPredicted RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 FETUBQ9UGM5 382 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 ZMYND8Q9ULU4 1186 aaPredicted RBP15.8■□□□□ 0.12
SF3B4-201ENST00000271628 PCDHB5Q9Y5E4 795 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 NCAM2O15394 837 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 OR4Q2P0C623 313 aa15.8■□□□□ 0.12
SF3B4-201ENST00000271628 CCL5P13501 91 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms