RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 SYDE1Q6ZW31 735 aaPredicted RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 RBM15Q96T37 977 aaKnown RBP eCLIP17.07■□□□□ 0.32
USP4-201ENST00000265560 TPX2Q9ULW0 747 aaKnown RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 DNALI1O14645 258 aaPredicted RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 EFEMP1Q12805 493 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 PSMD5Q16401 504 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 C1orf53Q5VUE5 145 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 HIBCHQ6NVY1 386 aaPredicted RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 DENND5BQ6ZUT9 1274 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 C16orf59Q7L2K0 433 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 TTC16Q8NEE8 873 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 CELF6Q96J87 481 aaKnown RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 PABPC3Q9H361 631 aaKnown RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 DOCK6Q96HP0 2047 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 AVILO75366 819 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 RASIP1Q5U651 963 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 RFX8Q6ZV50 586 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.07■□□□□ 0.32
USP4-201ENST00000265560 CPT1BQ92523 772 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 YME1L1Q96TA2 773 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 PCDH9Q9HC56 1237 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 SAYSD1Q9NPB0 183 aa17.07■□□□□ 0.32
USP4-201ENST00000265560 CXXC1Q9P0U4 656 aaPredicted RBP17.07■□□□□ 0.32
USP4-201ENST00000265560 ERCC2P18074 760 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 EPHB2P29323 1055 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 AP1B1Q10567 949 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 GPR17Q13304 367 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 KRT71Q3SY84 523 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 DENND2CQ68D51 928 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 FAM71BQ8TC56 605 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 FBXO32Q969P5 355 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 FAF2Q96CS3 445 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 PIH1D1Q9NWS0 290 aaKnown RBP17.06■□□□□ 0.32
USP4-201ENST00000265560 KCNK1O00180 336 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 LRIG2O94898 1065 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 HPDP32754 393 aaPredicted RBP17.06■□□□□ 0.32
USP4-201ENST00000265560 ATP1A2P50993 1020 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 TPI1P60174 286 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 USP41Q3LFD5 358 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 MSS51Q4VC12 460 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 ANKS3Q6ZW76 656 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 CCDC13Q8IYE1 715 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 EPS8L3Q8TE67 593 aaKnown RBP17.06■□□□□ 0.32
USP4-201ENST00000265560 MED4Q9NPJ6 270 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 RAB6BQ9NRW1 208 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 ABCC13Q9NSE7 274 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 ADAM21Q9UKJ8 722 aa17.06■□□□□ 0.32
USP4-201ENST00000265560 GOLGA6CA6NDK9 693 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 RIPK2O43353 540 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 TMEM63AO94886 807 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 GOLGA6DP0CG33 693 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 ATF6P18850 670 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 RNASEH2BQ5TBB1 312 aaKnown RBP17.05■□□□□ 0.32
USP4-201ENST00000265560 NPWQ8N729 165 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 TMEM169Q96HH4 297 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 CLSTN3Q9BQT9 956 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 GOLGA6AQ9NYA3 693 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 OR6C75A6NL08 312 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 SCAMP3O14828 347 aaKnown RBP17.05■□□□□ 0.32
USP4-201ENST00000265560 SEC24AO95486 1093 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 PAX3P23760 479 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 YWHAQP27348 245 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 CXCR3P49682 368 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 LONRF1Q17RB8 773 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 FNBP1LQ5T0N5 605 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 VSTM1Q6UX27 236 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 BADQ92934 168 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 SH3GL2Q99962 352 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 NCAPGQ9BPX3 1015 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 TMEM175Q9BSA9 504 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 CCSER2Q9H7U1 834 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 TBC1D4O60343 1298 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 PAGE1O75459 146 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 RARGP13631 454 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 VAV1P15498 845 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 TGM2P21980 687 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 ZBED8Q8IZ13 594 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 IRGQQ8WZA9 623 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 FUBP3Q96I24 572 aaKnown RBP eCLIP17.05■□□□□ 0.32
USP4-201ENST00000265560 PRDM12Q9H4Q4 367 aa17.05■□□□□ 0.32
USP4-201ENST00000265560 H3BRJ5 948 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 PARNO95453 639 aaKnown RBP17.04■□□□□ 0.32
USP4-201ENST00000265560 MFSD5Q6N075 450 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 PRCCQ92733 491 aaPredicted RBP17.04■□□□□ 0.32
USP4-201ENST00000265560 PNPLA8Q9NP80 782 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 MPP6Q9NZW5 540 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 ABHD14A-ACY1A0A1B0GW23 586 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 IRAK2O43187 625 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 OPA1O60313 960 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 PDIA2Q13087 525 aaKnown RBP17.04■□□□□ 0.32
USP4-201ENST00000265560 ARL13BQ3SXY8 428 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 SPRED2Q7Z698 418 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 RABEP2Q9H5N1 569 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 CYP4F11Q9HBI6 524 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 NDFIP2Q9NV92 336 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 NINJ2Q9NZG7 142 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 CTNNAL1Q9UBT7 734 aa17.04■□□□□ 0.32
USP4-201ENST00000265560 TRIM66O15016 1216 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 METTL18O95568 372 aa17.03■□□□□ 0.32
USP4-201ENST00000265560 APRTP07741 180 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms