RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 PCMTD2Q9NV79 361 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 STOML1Q9UBI4 398 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 TCRBV5S1A1TA0A578 114 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 RBM47A0AV96 593 aaKnown RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 BCLAF3A2AJT9 711 aaKnown RBP16.79■□□□□ 0.28
CTCF-201ENST00000264010 SDR42E2A6NKP2 422 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 NOS2P35228 1153 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 XRCC4Q13426 336 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 EFTUD2Q15029 972 aaKnown RBP eCLIP16.79■□□□□ 0.286e-7■■■■■ 47.1
CTCF-201ENST00000264010 MROH9Q5TGP6 573 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 RNF43Q68DV7 783 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 MAMDC4Q6UXC1 1216 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 AGGF1Q8N302 714 aaeCLIP16.79■□□□□ 0.28
CTCF-201ENST00000264010 ARHGAP18Q8N392 663 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 KLHL23Q8NBE8 558 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 SMC1BQ8NDV3 1235 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 APOPT1Q96IL0 206 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 SYT15Q9BQS2 421 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 DDIT4Q9NX09 232 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 FETUBQ9UGM5 382 aa16.79■□□□□ 0.28
CTCF-201ENST00000264010 TMEM63AO94886 807 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 ALADP13716 330 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 KCTD21Q4G0X4 260 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 NLRP9Q7RTR0 991 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 CCNJLQ8IV13 435 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 ST13P4Q8IZP2 240 aaPredicted RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 NAT9Q9BTE0 207 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 DPEP3Q9H4B8 488 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 CYLDQ9NQC7 956 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 MAGED2Q9UNF1 606 aaPredicted RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 TCRBV9S1A1TA0A576 114 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 PPEF2O14830 753 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 ATP6V1G1O75348 118 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 NPR3P17342 541 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 MATKP42679 507 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 CHADLQ6NUI6 762 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 ADGRD1Q6QNK2 874 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 STRADAQ7RTN6 431 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 NANOGNBQ7Z5D8 188 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.78■□□□□ 0.28
CTCF-201ENST00000264010 COLGALT1Q8NBJ5 622 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 RNF139Q8WU17 664 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 FAM193BQ96PV7 902 aaPredicted RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 CCDC195A0A1B0GUA6 201 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 XPO1O14980 1071 aaKnown RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 TREHO43280 583 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 HNRNPCL1O60812 293 aaKnown RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 APOEP02649 317 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 OVGP1Q12889 678 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 SOWAHAQ2M3V2 549 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 WSCD1Q658N2 575 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 RASSF3Q86WH2 238 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 TOP6BLQ8N6T0 577 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 AGAP3Q96P47 875 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 VPS11Q9H270 941 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 PFDN4Q9NQP4 134 aa16.78■□□□□ 0.28
CTCF-201ENST00000264010 MTO1Q9Y2Z2 717 aaKnown RBP16.78■□□□□ 0.28
CTCF-201ENST00000264010 MANSC4A6NHS7 340 aaPredicted RBP16.77■□□□□ 0.28
CTCF-201ENST00000264010 RPS6KA3P51812 740 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 OLFML1Q6UWY5 402 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 TMEM130Q8N3G9 435 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 PCDH19Q8TAB3 1148 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 SENP8Q96LD8 212 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 PPARGC1AQ9UBK2 798 aaKnown RBP16.77■□□□□ 0.28
CTCF-201ENST00000264010 IPPQ9Y573 584 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.77■□□□□ 0.28
CTCF-201ENST00000264010 MTSS1O43312 755 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 F9P00740 461 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 AKR1A1P14550 325 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 WDR75Q8IWA0 830 aaKnown RBP16.77■□□□□ 0.28
CTCF-201ENST00000264010 PEBP4Q96S96 227 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 GOLGA2P5Q9HBQ8 144 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 FER1L6Q2WGJ9 1857 aa16.77■□□□□ 0.28
CTCF-201ENST00000264010 NPLOC4Q8TAT6 608 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 AGAP11Q8TF27 550 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 SLC35F5Q8WV83 523 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 NMD3Q96D46 503 aaKnown RBP16.77■□□□□ 0.27
CTCF-201ENST00000264010 MTG1Q9BT17 334 aaPredicted RBP16.77■□□□□ 0.27
CTCF-201ENST00000264010 DUSP16Q9BY84 665 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 GPR182O15218 404 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 AVILO75366 819 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 POLBP06746 335 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 CCND1P24385 295 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 TYK2P29597 1187 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 WNT8BQ93098 351 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 E2F7Q96AV8 911 aa16.77■□□□□ 0.27
CTCF-201ENST00000264010 SSU72Q9NP77 194 aaKnown RBP16.77■□□□□ 0.27
CTCF-201ENST00000264010 FARP1Q9Y4F1 1045 aaPredicted RBP16.77■□□□□ 0.27
CTCF-201ENST00000264010 ASMTLO95671 621 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 WDR4P57081 412 aaKnown RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 MRPS35P82673 323 aaKnown RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 CDK16Q00536 496 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 RASA2Q15283 850 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SLC1A5Q15758 541 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 ZNF483Q8TF39 744 aaPredicted RBP16.76■□□□□ 0.27
CTCF-201ENST00000264010 SOCS4Q8WXH5 440 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 CSPG4P5Q96PW8 444 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SIK2Q9H0K1 926 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 POPDC2Q9HBU9 364 aa16.76■□□□□ 0.27
CTCF-201ENST00000264010 SLCO1B3Q9NPD5 702 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms