RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 VWA5B1Q5TIE3 1220 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 IER5Q5VY09 327 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 PMF1Q6P1K2 205 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 IZUMO2Q6UXV1 221 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 C7orf31Q8N865 590 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 PPFIBP2Q8ND30 876 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 AGR3Q8TD06 166 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 FNIP1Q8TF40 1166 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 DEPDC1BQ8WUY9 529 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 PYDC1Q8WXC3 89 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 MOCOSQ96EN8 888 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 PTPN18Q99952 460 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 CNPY3Q9BT09 278 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 SNRNP25Q9BV90 132 aaKnown RBP10.39□□□□□ -0.75
LIG3-201ENST00000262327 COX16Q9P0S2 106 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 SLC7A8Q9UHI5 535 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 GINS2Q9Y248 185 aa10.39□□□□□ -0.75
LIG3-201ENST00000262327 LCTP09848 1927 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 LOC100653049A0A140TA62 436 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 STRNO43815 780 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 KRT34O76011 436 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 APOEP02649 317 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 SLC10A3P09131 477 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 SKIP12755 728 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 CACNA2D1P54289 1103 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 SESN2P58004 480 aaPredicted RBP10.38□□□□□ -0.75
LIG3-201ENST00000262327 FOXB2Q5VYV0 432 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 ATG14Q6ZNE5 492 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 DENND5BQ6ZUT9 1274 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 ACOT1Q86TX2 421 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 CRLF3Q8IUI8 442 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 FBXO16Q8IX29 292 aaPredicted RBP10.38□□□□□ -0.75
LIG3-201ENST00000262327 ULK2Q8IYT8 1036 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 HACE1Q8IYU2 909 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 ADGRF2Q8IZF7 708 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 HPDLQ96IR7 371 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 HHIPL1Q96JK4 782 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 DHX35Q9H5Z1 703 aaKnown RBP10.38□□□□□ -0.75
LIG3-201ENST00000262327 PCDH18Q9HCL0 1135 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 PAK5Q9P286 719 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 WDR27A2RRH5 827 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 SPECC1L-ADORA2AF8WAN1 911 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 SMAPO00193 183 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 NDC80O14777 642 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 CHADO15335 359 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 TGDSO95455 350 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 VTNP04004 478 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 OCRLQ01968 901 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 STX3Q13277 289 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 TFDP2Q14188 446 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 GOLGA7BQ2TAP0 167 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 PPM1JQ5JR12 505 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 PPP1R36Q96LQ0 422 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 BCO2Q9BYV7 579 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 KLC2Q9H0B6 622 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 ZNF358Q9NW07 568 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 WDR35Q9P2L0 1181 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 STX18Q9P2W9 335 aaKnown RBP10.38□□□□□ -0.75
LIG3-201ENST00000262327 DNAJC16Q9Y2G8 782 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 LRCH1Q9Y2L9 728 aa10.38□□□□□ -0.75
LIG3-201ENST00000262327 A0A087WZ62 844 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 CAPN14A8MX76 684 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ACKR2O00590 384 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PPEF2O14830 753 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 B4GALT4O60513 344 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 HNRNPCL1O60812 293 aaKnown RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 ANPEPP15144 967 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 KRT72Q14CN4 511 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 FAM110CQ1W6H9 321 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 LRRC23Q53EV4 343 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 TEX44Q53QW1 395 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PPP1R26Q5T8A7 1209 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 MTHFD1LQ6UB35 978 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PYROXD2Q8N2H3 581 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIG3-201ENST00000262327 STKLD1Q8NE28 680 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 NDRG1Q92597 394 aaKnown RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 SPATA33Q96N06 139 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 GORASP1Q9BQQ3 440 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 FDXACB1Q9BRP7 624 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 YIPF2Q9BWQ6 316 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 PTPRHQ9HD43 1115 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TMPRSS4Q9NRS4 437 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 SCOCQ9UIL1 159 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 HBS1LQ9Y450 684 aaKnown RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 PSAT1Q9Y617 370 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 MGAMO43451 1857 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TGFB3P10600 412 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 CYP2F1P24903 491 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 MAGEA10P43363 369 aaPredicted RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 AP1B1Q10567 949 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 FASTKD1Q53R41 847 aaKnown RBP10.37□□□□□ -0.75
LIG3-201ENST00000262327 ATG16L1Q676U5 607 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 OR52E8Q6IFG1 317 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TSHZ1Q6ZSZ6 1077 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ZNF534Q76KX8 674 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 TMPRSS6Q8IU80 811 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.37□□□□□ -0.75
LIG3-201ENST00000262327 MTBPQ96DY7 904 aa10.37□□□□□ -0.75
LIG3-201ENST00000262327 ZNF778Q96MU6 729 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms