RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 STEAP4Q687X5 459 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 NCBP2-AS2Q69YL0 99 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 MARK2Q7KZI7 788 aaKnown RBP19.3■□□□□ 0.68
CPSF3-201ENST00000238112 GPC2Q8N158 579 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ACMSDQ8TDX5 336 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 CENPIQ92674 756 aaPredicted RBP19.3■□□□□ 0.68
CPSF3-201ENST00000238112 CLMNQ96JQ2 1002 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 THTPAQ9BU02 230 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 C11orf84Q9BUA3 381 aaPredicted RBP19.3■□□□□ 0.68
CPSF3-201ENST00000238112 MROH8Q9H579 483 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 MTMR10Q9NXD2 777 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 A0A0A0MRY4 1105 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 SDR42E2A6NKP2 422 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 PRR5-ARHGAP8B1AHC4 643 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 NPTXRO95502 500 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 MLNP12872 115 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ADORA2BP29275 332 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ARL4AP40617 200 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ARHGAP8P85298 464 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 BST2Q10589 180 aaKnown RBP19.3■□□□□ 0.68
CPSF3-201ENST00000238112 DCAF4L1Q3SXM0 396 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 STXBP5Q5T5C0 1151 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ARHGAP17Q68EM7 881 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 TMEM154Q6P9G4 183 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ARMCX2Q7L311 632 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 UNC93AQ86WB7 457 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ERO1BQ86YB8 467 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 ULK2Q8IYT8 1036 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 UNC5BQ8IZJ1 945 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 CCDC185Q8N715 623 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 FAM136AQ96C01 138 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 SPATA13Q96N96 652 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 LPIN3Q9BQK8 851 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 EBF4Q9BQW3 602 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 NME7Q9Y5B8 376 aa19.3■□□□□ 0.68
CPSF3-201ENST00000238112 MCM3APO60318 1980 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 ZSWIM8A7E2V4 1837 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 COL1A2P08123 1366 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 HACD1B0YJ81 288 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 CXCL11O14625 94 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 GLRA3O75311 464 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 ALDH1A2O94788 518 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 STK10O94804 968 aaKnown RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 CRADDP78560 199 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 LBRQ14739 615 aaKnown RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 HACE1Q8IYU2 909 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 DPEP3Q9H4B8 488 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 PLEKHA5Q9HAU0 1116 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 PLA2G4CQ9UP65 541 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 SORCS3Q9UPU3 1222 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 DERAQ9Y315 318 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 NR2E3Q9Y5X4 410 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 DCAF8L1A6NGE4 600 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 ADM5C9JUS6 153 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 CYP2C8P10632 490 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 VAV1P15498 845 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 GOT1P17174 413 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 BCAT1P54687 386 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 RPL10AP62906 217 aaKnown RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 UBAP2LQ14157 1087 aaKnown RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 SOWAHAQ2M3V2 549 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 N4BP2L1Q5TBK1 243 aaPredicted RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 C16orf46Q6P387 395 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 PACS1Q6VY07 963 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 RIPOR1Q6ZS17 1223 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 COLGALT1Q8NBJ5 622 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 BEST2Q8NFU1 509 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 PIWIL2Q8TC59 973 aaKnown RBP19.29■□□□□ 0.68
CPSF3-201ENST00000238112 APOL6Q9BWW8 343 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 CXCL16Q9H2A7 254 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 VCXQ9H320 206 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 XPNPEP3Q9NQH7 507 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 SNTG2Q9NY99 539 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 SLC17A6Q9P2U8 582 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 TUBGCP4Q9UGJ1 667 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 DNAJC16Q9Y2G8 782 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 MFHAS1Q9Y4C4 1052 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 WASF2Q9Y6W5 498 aa19.29■□□□□ 0.68
CPSF3-201ENST00000238112 TPP1O14773 563 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 DGKIO75912 1065 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 CCDC130P13994 396 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 ADORA2AP29274 412 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 SCNN1AP37088 669 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 SESN2P58004 480 aaPredicted RBP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 NIPAL4Q0D2K0 466 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 MBLAC2Q68D91 279 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 LRRC8BQ6P9F7 803 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 SULF1Q8IWU6 871 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 ZMAT2Q96NC0 199 aaKnown RBP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 LGMNQ99538 433 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 FERMT1Q9BQL6 677 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 YIPF3Q9GZM5 350 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 GTF2IRD1Q9UHL9 959 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 ALDOAP04075 364 aaKnown RBP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 PEX19P40855 299 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 SLC1A6P48664 564 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 C1orf146Q5VVC0 180 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 BSPRYQ5W0U4 402 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 CCNJLQ8IV13 435 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms