RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 DENND1BQ6P3S1 775 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 GJB7Q6PEY0 223 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 LCLAT1Q6UWP7 414 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 TRMT11Q7Z4G4 463 aaKnown RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 TRIM59Q8IWR1 403 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 SCUBE3Q8IX30 993 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 ZNF276Q8N554 614 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 IPO4Q8TEX9 1081 aaKnown RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 SPACA7Q96KW9 195 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 EDEM2Q9BV94 578 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 DCLK3Q9C098 648 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 UBE2TQ9NPD8 197 aaPredicted RBP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 ACP6Q9NPH0 428 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 CD93Q9NPY3 652 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 TMEM74BQ9NUR3 256 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 CALCOCO1Q9P1Z2 691 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 KIAA1257Q9ULG3 409 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 CYP8B1Q9UNU6 501 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.76□□□□□ -0.69
SCN1A-222ENST00000642141 ZNF510Q9Y2H8 683 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 STARD13Q9Y3M8 1113 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 NCOR2Q9Y618 2525 aa10.76□□□□□ -0.69
SCN1A-222ENST00000642141 GOLGA6L7A0A1B0GV03 622 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 LNP1A1A4G5 178 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 KHNYNO15037 678 aaKnown RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 FOXD2O60548 495 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 PENKP01210 267 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 CYBBP04839 570 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 SETSIPP0DME0 302 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 NDUFV2P19404 249 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 ITPKAP23677 461 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 USP8P40818 1118 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 MAPK8P45983 427 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 HARS2P49590 506 aaKnown RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 MFAP3P55082 362 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 DAOAP59103 153 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 RPL6Q02878 288 aaKnown RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 TRIP4Q15650 581 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 CNGA2Q16280 664 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 UAP1L1Q3KQV9 507 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 PKDCCQ504Y2 493 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 HSP90AA4PQ58FG1 418 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 KIAA1324Q6UXG2 1013 aaKnown RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 CACUL1Q86Y37 369 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 KCNV2Q8TDN2 545 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 SLC35F5Q8WV83 523 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 KCTD13Q8WZ19 329 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 PLD4Q96BZ4 506 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 MED15Q96RN5 788 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 CIPCQ9C0C6 399 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 FAM124BQ9H5Z6 455 aaPredicted RBP10.75□□□□□ -0.69
SCN1A-222ENST00000642141 ST7Q9NRC1 585 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 KIAA1468Q9P260 1216 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 STON1Q9Y6Q2 735 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 SPTBN2O15020 2390 aa10.75□□□□□ -0.69
SCN1A-222ENST00000642141 FAM170AA1A519 330 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 PMM2O15305 246 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 LETM1O95202 739 aaPredicted RBP10.74□□□□□ -0.69
SCN1A-222ENST00000642141 GNA14O95837 355 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 CFIP05156 583 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 SLC9A1P19634 815 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 SGSHP51688 502 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 UBE2HP62256 183 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 ARHGAP44Q17R89 818 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 TMEM215Q68D42 235 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 RFWD3Q6PCD5 774 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 C11orf74Q86VG3 221 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 ADAM32Q8TC27 787 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 CYB5D2Q8WUJ1 264 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 PIWIL1Q96J94 861 aaKnown RBP10.74□□□□□ -0.69
SCN1A-222ENST00000642141 MRGPRX1Q96LB2 322 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 CNTNAP3BQ96NU0 1288 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 GABRG3Q99928 467 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 CNTNAP3Q9BZ76 1288 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 CNGB3Q9NQW8 809 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 ABCC13Q9NSE7 274 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 OLA1Q9NTK5 396 aaKnown RBP10.74□□□□□ -0.69
SCN1A-222ENST00000642141 STIM2Q9P246 746 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 FBXO10Q9UK96 956 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 HBS1LQ9Y450 684 aaKnown RBP10.74□□□□□ -0.69
SCN1A-222ENST00000642141 THADAQ6YHU6 1953 aa10.74□□□□□ -0.69
SCN1A-222ENST00000642141 SPAG17Q6Q759 2223 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 IGHV1OR15-9A0A0B4J2B8 117 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 TM4SF5O14894 197 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 GIPC1O14908 333 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 P4HA2O15460 535 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 THAP12O43422 761 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 LTFP02788 710 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 NCAM1P13591 858 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 HLA-EP13747 358 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 HOXD9P28356 352 aaPredicted RBP10.73□□□□□ -0.69
SCN1A-222ENST00000642141 IL12RB1P42701 662 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 NUMBP49757 651 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 ZNF132P52740 706 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 BYSLQ13895 437 aaKnown RBP10.73□□□□□ -0.69
SCN1A-222ENST00000642141 FUT11Q495W5 492 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 MPPE1Q53F39 396 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 TRIM61Q5EBN2 209 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 ADGRF1Q5T601 910 aa10.73□□□□□ -0.69
SCN1A-222ENST00000642141 N4BP2L1Q5TBK1 243 aaPredicted RBP10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms