RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 YBEYP58557 167 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NFE2Q16621 373 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SSX9Q7RTT3 188 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TMEM151BQ8IW70 566 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SLC35F6Q8N357 371 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 OR56B2PQ8NGI1 322 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KIAA1191Q96A73 305 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 STRA6Q9BX79 667 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CHD2O14647 1828 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L3A6NCW0 530 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L4A6NCW7 530 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 WRBO00258 174 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 O00370 1275 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RGS10O43665 173 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 EIF2S1P05198 315 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TPOP07202 933 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CHRNA5P30532 468 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-8P63133 956 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CDK17Q00537 523 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PABPC4Q13310 644 aaKnown RBP eCLIP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L2Q6R6M4 530 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 USP17L1Q7RTZ2 530 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 FAF2Q96CS3 445 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GIMAP5Q96F15 307 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ACPTQ9BZG2 426 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 C12orf65Q9H3J6 166 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GORASP2Q9H8Y8 452 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DDX19AQ9NUU7 478 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ERVK-11Q9UQG0 969 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CHKBQ9Y259 395 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DPPA5A6NC42 116 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 LACTBL1A8MY62 500 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DNM1LO00429 736 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 AURKAO14965 403 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CYP27B1O15528 508 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 STX10O60499 249 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ADAMTS4O75173 837 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TOMM70O94826 608 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SPARCP09486 303 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MLNP12872 115 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GRK4P32298 578 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PAFAH1B1P43034 410 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 HSPA13P48723 471 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DEFA6Q01524 100 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MKRN4PQ13434 485 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KCNC3Q14003 757 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 E2F2Q14209 437 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TBCELQ5QJ74 424 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ERN2Q76MJ5 926 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZNF557Q8N988 423 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 UBTD1Q9HAC8 227 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 VTA1Q9NP79 307 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 THAP1Q9NVV9 213 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHB4Q9Y5E5 795 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PCDHB12Q9Y5F1 795 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ST14Q9Y5Y6 855 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PTPRCP08575 1304 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 EIF3DO15371 548 aaKnown RBP eCLIP3.67□□□□□ -1.823e-6■■□□□ 11.9
SCN1A-221ENST00000641996 CCNT2O60583 730 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CCDC22O60826 627 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PTBP3O95758 552 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 AGTP01019 485 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CD63P08962 238 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TAGLN2P37802 199 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 FXR1P51114 621 aaKnown RBP eCLIP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 HDGFP51858 240 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GTF2A2P52657 109 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RACK1P63244 317 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TUBB8Q3ZCM7 444 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 HID1Q8IV36 788 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TRIM59Q8IWR1 403 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MAFIPQ8WZ33 124 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CINPQ9BW66 212 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 LGR6Q9HBX8 967 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 SPTLC3Q9NUV7 552 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 COQ6Q9Y2Z9 468 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ASB4Q9Y574 426 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 MYPNQ86TC9 1320 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 FAM92AA1XBS5 289 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 TM9SF1O15321 606 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CTIFO43310 598 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PTBP1P26599 531 aaKnown RBP eCLIP3.67□□□□□ -1.823e-7■■■■□ 20.5
SCN1A-221ENST00000641996 PRKCEQ02156 737 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 IL18R1Q13478 541 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CEBPEQ15744 281 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KRT40Q6A162 431 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RAET1GQ6H3X3 334 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NXPE4Q6UWF7 544 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 RAB11FIP2Q7L804 512 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 GLB1L3Q8NCI6 653 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 ZBTB34Q8NCN2 500 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 NELFBQ8WX92 580 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 JADE3Q92613 823 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 DPF1Q92782 380 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CDCA7LQ96GN5 454 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 CYTH2Q99418 400 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 EDEM2Q9BV94 578 aa3.67□□□□□ -1.82
SCN1A-221ENST00000641996 PAIP1Q9H074 479 aaKnown RBP3.67□□□□□ -1.82
SCN1A-221ENST00000641996 KLHL11Q9NVR0 708 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms