RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	CLEC16A	Q2KHT3	1053 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	DCAF6	Q58WW2	860 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	DGKK	Q5KSL6	1271 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	OTUD1	Q5VV17	481 aa	Predicted RBP	27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	TRNP1	Q6NT89	227 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	TRIM72	Q6ZMU5	477 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	MMS22L	Q6ZRQ5	1243 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	ZDHHC17	Q8IUH5	632 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	NAT16	Q8N8M0	369 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499	KCNH6	Q9H252	994 aa		27.81	■■■□□ 2.04
VEGFA-231	ENST00000640499		K7EQS6	105 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	CAPN9	O14815	690 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	TRUB2	O95900	331 aa	Known RBP	27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	MAGEA9	P43362	315 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	SNX16	P57768	344 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	CENPC	Q03188	943 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	ANO4	Q32M45	955 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	FYB2	Q5VWT5	728 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	TOGARAM2	Q6ZUX3	1019 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	C1orf210	Q8IVY1	113 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	CPXM2	Q8N436	756 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	TRIM62	Q9BVG3	475 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	NUP58	Q9BVL2	599 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	TMEM59L	Q9UK28	342 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499	TLR6	Q9Y2C9	796 aa		27.8	■■■□□ 2.04
VEGFA-231	ENST00000640499		A0A0A0MRY4	1105 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	IRAK2	O43187	625 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	TULP3	O75386	442 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	DAB1	O75553	588 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	TYR	P14679	529 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	TFE3	P19532	575 aa	Predicted RBP	27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	DRD1	P21728	446 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	SCNN1A	P37088	669 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	HARS2	P49590	506 aa	Known RBP	27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	NNT	Q13423	1086 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	LRRC32	Q14392	662 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	NADSYN1	Q6IA69	706 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	MAMSTR	Q6ZN01	415 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	PHLDB2	Q86SQ0	1253 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	SERPINB11	Q96P15	392 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	BBS2	Q9BXC9	721 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	PLK2	Q9NYY3	685 aa		27.79	■■■□□ 2.04
VEGFA-231	ENST00000640499	GOLGA6L7	A0A1B0GV03	622 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499		A0A1W2PQJ5	194 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	NEDD8-MDP1	E9PL57	170 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	PENK	P01210	267 aa	Predicted RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	HOXC13	P31276	330 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	EIF2D	P41214	584 aa	Known RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	PRKCI	P41743	596 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	ANGPT1	Q15389	498 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	ASIC2	Q16515	512 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	FAM133B	Q5BKY9	247 aa	Known RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	SFMBT2	Q5VUG0	894 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	ZNF571	Q7Z3V5	609 aa	Predicted RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	GAS2L3	Q86XJ1	694 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	PHF13	Q86YI8	300 aa	Predicted RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	BHMT	Q93088	406 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	MYEOV	Q96EZ4	313 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	C11orf70	Q9BRQ4	267 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	HAUS4	Q9H6D7	363 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	SPATA6	Q9NWH7	488 aa	Predicted RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	TAS2R14	Q9NYV8	317 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	XPO7	Q9UIA9	1087 aa	Known RBP	27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	FBXO10	Q9UK96	956 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	CLEC4E	Q9ULY5	219 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499	CAPN11	Q9UMQ6	739 aa		27.78	■■■□□ 2.04
VEGFA-231	ENST00000640499		H0Y858	1186 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	CACNG3	O60359	315 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	GYPC	P04921	128 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	CISD3	P0C7P0	127 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	SKIL	P12757	684 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	SLC6A4	P31645	630 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	CHKA	P35790	457 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	MATK	P42679	507 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	RNASE9	P60153	205 aa	Known RBP	27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	ZC3H12A	Q5D1E8	599 aa	Known RBP	27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	ADGRF1	Q5T601	910 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	SYNPO	Q8N3V7	929 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	CPLX3	Q8WVH0	158 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	NT5C3B	Q969T7	300 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	AZIN2	Q96A70	460 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	PNKP	Q96T60	521 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	NPY6R	Q99463	290 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	PRRX2	Q99811	253 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	RBSN	Q9H1K0	784 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	WDR35	Q9P2L0	1181 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	ARIH1	Q9Y4X5	557 aa	Predicted RBP	27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	CACNA1H	O95180	2353 aa		27.77	■■■□□ 2.04
VEGFA-231	ENST00000640499	ITIH6	Q6UXX5	1313 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	GOLGA8S	H3BPF8	625 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	RNF40	O75150	1001 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	LATS1	O95835	1130 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	CCDC172	P0C7W6	258 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	NOS2	P35228	1153 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	FLT3	P36888	993 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	SGSH	P51688	502 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	FAM102A	Q5T9C2	384 aa	Predicted RBP	27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	NUGGC	Q68CJ6	796 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	HGSNAT	Q68CP4	663 aa		27.76	■■■□□ 2.03
VEGFA-231	ENST00000640499	UNC45B	Q8IWX7	931 aa		27.76	■■■□□ 2.03

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms