RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 MTA1Q13330 715 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 STAT4Q14765 748 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 TDRD12Q587J7 1177 aaKnown RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 XKR6Q5GH73 641 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 STPG1Q5TH74 334 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 ISM2Q6H9L7 571 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 C8orf82Q6P1X6 216 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 PNMA8AQ86V59 439 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 EXOC3L1Q86VI1 746 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 PPP1R3BQ86XI6 285 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 UEVLDQ8IX04 471 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 FAM217AQ8IXS0 508 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 UBR7Q8N806 425 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 ADAMTS14Q8WXS8 1223 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 PPP2R3CQ969Q6 453 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 EME1Q96AY2 570 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 COA7Q96BR5 231 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 FBXO17Q96EF6 278 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 WDYHV1Q96HA8 205 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 EPYCQ99645 322 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 ACO2Q99798 780 aaKnown RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 VN1R3Q9BXE9 311 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 CAAP1Q9H8G2 361 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 GBA2Q9HCG7 927 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 KRCC1Q9NPI7 259 aaPredicted RBP0.67□□□□□ -2.3
VPS35-212ENST00000640313 SCRT2Q9NQ03 307 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 TMEM248Q9NWD8 314 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 FZD10Q9ULW2 581 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 PCDHA3Q9Y5H8 950 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 PHLDB1Q86UU1 1377 aa0.67□□□□□ -2.3
VPS35-212ENST00000640313 SPATA31A5Q5VU36 1347 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 WASHC2AQ641Q2 1341 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 SPATA31A7Q8IWB4 1347 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 LRRC14BA6NHZ5 514 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PCDHGA12O60330 932 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 ZRANB2O95218 330 aaKnown RBP eCLIP0.66□□□□□ -2.3
VPS35-212ENST00000640313 SGPL1O95470 568 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 WNT1P04628 370 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CYP1A2P05177 515 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TYRP14679 529 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 ARSBP15848 533 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 ST6GAL1P15907 406 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 HDCP19113 662 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 C5AR1P21730 350 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 ADRA1DP25100 572 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PRKAR1BP31321 381 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 UQCRC1P31930 480 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 MCM5P33992 734 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 SOX5P35711 763 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CDKN1AP38936 164 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 IARSP41252 1262 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 RFX5P48382 616 aaPredicted RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 SOX2P48431 317 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CDKN1CP49918 316 aaPredicted RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 JAK3P52333 1124 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PRKAG1P54619 331 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 DSCR10P59022 87 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TUBA1BP68363 451 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 KRT85P78386 507 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TIAL1Q01085 375 aaKnown RBP eCLIP0.66□□□□□ -2.3
VPS35-212ENST00000640313 AMPD3Q01432 767 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 KRT17Q04695 432 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 DEUP1Q05D60 604 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 EXOSC9Q06265 439 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 STRN3Q13033 797 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 NOGQ13253 232 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 SLC39A14Q15043 492 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CNGA3Q16281 694 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 LPAL2Q16609 132 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 PTCHD3Q3KNS1 767 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 DNTTIP2Q5QJE6 756 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 FNBP1LQ5T0N5 605 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 THEMIS2Q5TEJ8 643 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 OTUD1Q5VV17 481 aaPredicted RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 Q6ZTK2 550 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 HEATR3Q7Z4Q2 680 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 NECAB2Q7Z6G3 386 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CTU1Q7Z7A3 348 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 DDX42Q86XP3 938 aaKnown RBP eCLIP0.66□□□□□ -2.3
VPS35-212ENST00000640313 SPATS2Q86XZ4 545 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 AMOTL1Q8IY63 956 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TCP11L2Q8N4U5 519 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 ARL14EPQ8N8R7 260 aaPredicted RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 FAM71DQ8N9W8 422 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 BPIFB1Q8TDL5 484 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CHAC2Q8WUX2 184 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 TMEM171Q8WVE6 324 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 JADE3Q92613 823 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 CLMNQ96JQ2 1002 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 FAM167AQ96KS9 214 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 SLC25A33Q9BSK2 321 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 HTATIP2Q9BUP3 242 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 RBM4Q9BWF3 364 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 TRIM5Q9C035 493 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 MMP28Q9H239 520 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 IL25Q9H293 177 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 METTL14Q9HCE5 456 aaKnown RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 ABCF2Q9UG63 623 aa0.66□□□□□ -2.3
VPS35-212ENST00000640313 FEZ2Q9UHY8 353 aaPredicted RBP0.66□□□□□ -2.3
VPS35-212ENST00000640313 SERPINB13Q9UIV8 391 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms