RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 PHF13Q86YI8 300 aaPredicted RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 CNGA4Q8IV77 575 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 OR8K1Q8NGG5 319 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 DQX1Q8TE96 717 aaKnown RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 PLD4Q96BZ4 506 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 MRFAP1L1Q96HT8 127 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 SERPINB11Q96P15 392 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 SYT11Q9BT88 431 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 FAM204AQ9H8W3 233 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 GTSE1Q9NYZ3 720 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 NDRG2Q9UN36 371 aaKnown RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 HBS1LQ9Y450 684 aaKnown RBP18.86■□□□□ 0.61
CLN3-239ENST00000628023 PIAS3Q9Y6X2 628 aa18.86■□□□□ 0.61
CLN3-239ENST00000628023 TICRRQ7Z2Z1 1910 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 ARNTLO00327 626 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 STC2O76061 302 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 FYNP06241 537 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 SCNN1AP37088 669 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 CDK17Q00537 523 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 EML3Q32P44 896 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 ACAD10Q6JQN1 1059 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 ERMP1Q7Z2K6 904 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 PHLDB2Q86SQ0 1253 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 BBS7Q8IWZ6 715 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 DEFB106AQ8N104 65 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 ADAM32Q8TC27 787 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 FAM3CQ92520 227 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 WBP2Q969T9 261 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 SLC2A13Q96QE2 648 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 IER2Q9BTL4 223 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 DCLK3Q9C098 648 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 LINC00597Q9H2U6 94 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 HPS4Q9NQG7 708 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 METTL5Q9NRN9 209 aaKnown RBP18.85■□□□□ 0.61
CLN3-239ENST00000628023 ZSCAN32Q9NX65 697 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 WDR35Q9P2L0 1181 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 KIF26AQ9ULI4 1882 aaPredicted RBP18.85■□□□□ 0.61
CLN3-239ENST00000628023 F5P12259 2224 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 ZNF292O60281 2723 aa18.85■□□□□ 0.61
CLN3-239ENST00000628023 FANCMQ8IYD8 2048 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 AKR1B15C9JRZ8 316 aaPredicted RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 CORO1AP31146 461 aaKnown RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 HARS2P49590 506 aaKnown RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 ADKP55263 362 aaKnown RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 TBX4P57082 545 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 C1QBPQ07021 282 aaKnown RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 NR1H3Q13133 447 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 TRIP4Q15650 581 aaPredicted RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 SYPL2Q5VXT5 272 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 HGSNATQ68CP4 663 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 C1orf228Q6PIY5 440 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 HTR3DQ70Z44 454 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 TAC4Q86UU9 113 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 DENND1CQ8IV53 801 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 DRC7Q8IY82 874 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 KIAA2013Q8IYS2 634 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 OTUB2Q96DC9 234 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 DNAJC7Q99615 494 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 FAM126AQ9BYI3 521 aaPredicted RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 DEF6Q9H4E7 631 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 C8orf33Q9H7E9 229 aaPredicted RBP18.84■□□□□ 0.61
CLN3-239ENST00000628023 ECT2Q9H8V3 914 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 ABHD10Q9NUJ1 306 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 TAS2R14Q9NYV8 317 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.84■□□□□ 0.61
CLN3-239ENST00000628023 STAP1Q9ULZ2 295 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 ZNF510Q9Y2H8 683 aa18.84■□□□□ 0.61
CLN3-239ENST00000628023 DMDP11532 3685 aa18.83■□□□□ 0.61
CLN3-239ENST00000628023 SYNJ2BP-COX16A0A087WUM0 186 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 DDX3XO00571 662 aaKnown RBP eCLIP18.83■□□□□ 0.63e-8■■■□□ 15.1
CLN3-239ENST00000628023 TRUB2O95900 331 aaKnown RBP18.83■□□□□ 0.6
CLN3-239ENST00000628023 PLEKP08567 350 aaPredicted RBP18.83■□□□□ 0.6
CLN3-239ENST00000628023 GBP1P32455 592 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 NOS2P35228 1153 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 NRLP54845 237 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 MLLT6P55198 1093 aaPredicted RBP18.83■□□□□ 0.6
CLN3-239ENST00000628023 DNAJC24Q6P3W2 148 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 MON1BQ7L1V2 547 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 MSANTD3Q96H12 275 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 SELENOOQ9BVL4 669 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 COX16Q9P0S2 106 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 NCDNQ9UBB6 729 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 ADAMTS1Q9UHI8 967 aa18.83■□□□□ 0.6
CLN3-239ENST00000628023 COL4A3Q01955 1670 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 ADH1CP00326 375 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 GZMAP12544 262 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 HNRNPH3P31942 346 aaKnown RBP18.82■□□□□ 0.6
CLN3-239ENST00000628023 MATKP42679 507 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 SOX9P48436 509 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 SULT1E1P49888 294 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 AMPD2Q01433 879 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 PTP4A2Q12974 167 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 MTAPQ13126 283 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 TBX2Q13207 712 aaPredicted RBP18.82■□□□□ 0.6
CLN3-239ENST00000628023 NNTQ13423 1086 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 NUGGCQ68CJ6 796 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 UNC45BQ8IWX7 931 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 MCOLN2Q8IZK6 566 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 SUMF1Q8NBK3 374 aa18.82■□□□□ 0.6
CLN3-239ENST00000628023 OLIG1Q8TAK6 271 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms