RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SLC2A3P11169 496 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 HOXD11P31277 338 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 SDC4P31431 198 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 NR1H3Q13133 447 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 NME3Q13232 169 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 GSE1Q14687 1217 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 EML3Q32P44 896 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 TRIM68Q6AZZ1 485 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 PLEKHA7Q6IQ23 1121 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 SND1Q7KZF4 910 aaKnown RBP eCLIP19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 DENND1CQ8IV53 801 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 CPA6Q8N4T0 437 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 JOSD2Q8TAC2 188 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 RXFP2Q8WXD0 754 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 MCEEQ96PE7 176 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 NPY6RQ99463 290 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 LINC00597Q9H2U6 94 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 EBF3Q9H4W6 596 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 MRPL47Q9HD33 250 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 SPTLC3Q9NUV7 552 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 COX16Q9P0S2 106 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 MYO1AQ9UBC5 1043 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 NENFQ9UMX5 172 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 PAXBP1Q9Y5B6 917 aa19.89■□□□□ 0.77
SQSTM1-216ENST00000626660 TCRBV5S1A1TA0A578 114 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 C2CD4BA6NLJ0 364 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 GREM1O60565 184 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 LATS1O95835 1130 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 IGLV3-25P01717 112 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 IGLV3-27P01718 113 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 H2AFZP0C0S5 128 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 ARSAP15289 507 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 GPD1P21695 349 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 FECHP22830 423 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 RFC1P35251 1148 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 SLC11A2P49281 568 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 GALCP54803 685 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 PITX1P78337 314 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 DEUP1Q05D60 604 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 MAMLD1Q13495 774 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 RUNX3Q13761 415 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 ITPRIPL2Q3MIP1 535 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 Q6ZNB5 142 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 H2AFVQ71UI9 128 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 BBS7Q8IWZ6 715 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 CTNNBL1Q8WYA6 563 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 EDAQ92838 391 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 NT5C3BQ969T7 300 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 FCRL2Q96LA5 508 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 CFAP57Q96MR6 1250 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 TBCBQ99426 244 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 BAG1Q99933 345 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.88■□□□□ 0.773e-6■■□□□ 13.4
SQSTM1-216ENST00000626660 WNT16Q9UBV4 365 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 SLC12A6Q9UHW9 1150 aa19.88■□□□□ 0.77
SQSTM1-216ENST00000626660 F5P12259 2224 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 ARNTLO00327 626 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 IPO7O95373 1038 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 KLKB1P03952 638 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 CCR1P32246 355 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 PTPN9P43378 593 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 TNK2Q07912 1038 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 ZC3H12AQ5D1E8 599 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 PPP1R15BQ5SWA1 713 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 C10orf76Q5T2E6 689 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 TRNP1Q6NT89 227 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 PGAP3Q96FM1 320 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 SLC39A13Q96H72 371 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 THAP2Q9H0W7 228 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 LUC7LQ9NQ29 371 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 HPS4Q9NQG7 708 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 GTSE1Q9NYZ3 720 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 AGO1Q9UL18 857 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 MYOFQ9NZM1 2061 aa19.87■□□□□ 0.77
SQSTM1-216ENST00000626660 MOCS2O96007 188 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 ADH1CP00326 375 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 RDXP35241 583 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 CHKAP35790 457 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 RPL7AP62424 266 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 ATP11AP98196 1134 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 SIGLEC14Q08ET2 396 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 MTA1Q13330 715 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 SPA17Q15506 151 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 SLC44A4Q53GD3 710 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 ATP6V0D2Q8N8Y2 350 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 AZIN2Q96A70 460 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 DDX50Q9BQ39 737 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 CNPY3Q9BT09 278 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 C8orf33Q9H7E9 229 aaPredicted RBP19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 ECT2Q9H8V3 914 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 CA14Q9ULX7 337 aa19.86■□□□□ 0.77
SQSTM1-216ENST00000626660 PI4K2BG5E9Z4 385 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 GPR37L1O60883 481 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 CYP1A2P05177 515 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 GLULP15104 373 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 TFE3P19532 575 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 ZNF143P52747 638 aaPredicted RBP19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 AMPD2Q01433 879 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 PPP2R5DQ14738 602 aa19.85■□□□□ 0.77
SQSTM1-216ENST00000626660 MLF2Q15773 248 aaPredicted RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms