RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 THAP12O43422 761 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 KLHL41O60662 606 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 CSDE1O75534 798 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 NOL4O94818 638 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 ENO1P06733 434 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 ALOX5P09917 674 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TGFB3P10600 412 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 PRKACAP17612 351 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 CYP3A7P24462 503 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TPTEP56180 551 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 DSTNP60981 165 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 GALNT1Q10472 559 aaPredicted RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 HIC1Q14526 733 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 SMU1Q2TAY7 513 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TMC5Q6UXY8 1006 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 GPR141Q7Z602 305 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TRABD2AQ86V40 505 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RALGPS2Q86X27 583 aaPredicted RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 GALNT13Q8IUC8 556 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 ELMOD2Q8IZ81 293 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 PCDH12Q9NPG4 1184 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 VAV3Q9UKW4 847 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 PCDHB13Q9Y5F0 798 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TMEM150BA6NC51 233 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 B8ZZF3 427 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 ANKRD63C9JTQ0 380 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 M0QX08 132 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 FGFR1P11362 822 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RAG1P15918 1043 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RPL17P18621 184 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 CA4P22748 312 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 HMGB2P26583 209 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 RPA3P35244 121 aaPredicted RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 CAP2P40123 477 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 PIK3CAP42336 1068 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 PEX3P56589 373 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 MRPS9P82933 396 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 PTK2Q05397 1052 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 COG2Q14746 738 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 STAT4Q14765 748 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 SLC1A5Q15758 541 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RABGAP1LQ5R372 815 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 CYP4A22Q5TCH4 519 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 EEPD1Q7L9B9 569 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RDH13Q8NBN7 331 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 IL31RAQ8NI17 732 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 OXNAD1Q96HP4 312 aaPredicted RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 HOXD1Q9GZZ0 328 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 TRABDQ9H4I3 376 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 RAVER2Q9HCJ3 691 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 WDR6Q9NNW5 1121 aaKnown RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS39-214ENST00000614932 GMIPQ9P107 970 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 ARMCX1Q9P291 453 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 ZNRF3Q9ULT6 936 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 CPQQ9Y646 472 aa10.55□□□□□ -0.72
VPS39-214ENST00000614932 GREB1LQ9C091 1923 aaPredicted RBP10.55□□□□□ -0.72
VPS39-214ENST00000614932 IGLV3-22A0A075B6J6 115 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 H7C0C1 242 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 XPO1O14980 1071 aaKnown RBP10.54□□□□□ -0.72
VPS39-214ENST00000614932 GAS7O60861 476 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 C8BP07358 591 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 SLC9A1P19634 815 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 CCNIQ14094 377 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 BBS9Q3SYG4 887 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 SCARA3Q6AZY7 606 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 ALKBH5Q6P6C2 394 aaKnown RBP10.54□□□□□ -0.72
VPS39-214ENST00000614932 CCDC137Q6PK04 289 aaKnown RBP10.54□□□□□ -0.72
VPS39-214ENST00000614932 GALNT7Q86SF2 657 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 BRSK2Q8IWQ3 736 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 MYCT1Q8N699 235 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 ZNF577Q9BSK1 485 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 HERC2P3Q9BVR0 1158 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 KCTD10Q9H3F6 313 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 MYOZ2Q9NPC6 264 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 COL20A1Q9P218 1284 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 NAGPAQ9UK23 515 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 SLC22A1O15245 554 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 SLITRK3O94933 977 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 CSPG5O95196 566 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 KLHL38Q2WGJ6 581 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 HYIQ5T013 277 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 PLEKHA7Q6IQ23 1121 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 ZNF746Q6NUN9 644 aaPredicted RBP10.54□□□□□ -0.72
VPS39-214ENST00000614932 TTC27Q6P3X3 843 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 GJB7Q6PEY0 223 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 SLC15A4Q8N697 577 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 MINDY2Q8NBR6 621 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 HSPH1Q92598 858 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 KRT35Q92764 455 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 MBOAT7Q96N66 472 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 WDR11Q9BZH6 1224 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 C1orf21Q9H246 121 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 KCNK13Q9HB14 408 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 IFT122Q9HBG6 1241 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 TAGLN3Q9UI15 199 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 ATP8B3O60423 1300 aa10.54□□□□□ -0.72
VPS39-214ENST00000614932 ARHGAP42A6NI28 874 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CAPN14A8MX76 684 aa10.53□□□□□ -0.72
VPS39-214ENST00000614932 CCRL2O00421 344 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms