RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZNF852Q6ZMS4 543 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 VPS36Q86VN1 386 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 C3orf20Q8ND61 904 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 FLCNQ8NFG4 579 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 NT5C3BQ969T7 300 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 SLC39A13Q96H72 371 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 VCPIP1Q96JH7 1222 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 FCRL2Q96LA5 508 aaPredicted RBP17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 SPHK2Q9NRA0 654 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 ZDBF2Q9HCK1 2354 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 MYOFQ9NZM1 2061 aa17.23■□□□□ 0.35
CCDC28A-202ENST00000611852 TCRBV5S1A1TA0A578 114 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 AKR1B15C9JRZ8 316 aaPredicted RBP17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 RTN2O75298 545 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 GAB4Q2WGN9 574 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 LY6G5CQ5SRR4 150 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 OTUD1Q5VV17 481 aaPredicted RBP17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 CWF19L1Q69YN2 538 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 C1orf228Q6PIY5 440 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 DNAAF5Q86Y56 855 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 TMEM25Q86YD3 366 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 UNC45BQ8IWX7 931 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 FBXL6Q8N531 539 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 FAM3CQ92520 227 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 NPY6RQ99463 290 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 ADAM33Q9BZ11 813 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 FOXQ1Q9C009 403 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 FAM204AQ9H8W3 233 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 ZNHIT6Q9NWK9 470 aaKnown RBP17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 DDIT4Q9NX09 232 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 RRN3Q9NYV6 651 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 STAP1Q9ULZ2 295 aa17.22■□□□□ 0.35
CCDC28A-202ENST00000611852 A0A087X0T9 212 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 STK25O00506 426 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 GJB6O95452 261 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 LATS1O95835 1130 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 ADH1CP00326 375 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 FTLP02792 175 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 FAM228BP0C875 321 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 TFE3P19532 575 aaPredicted RBP17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 RRM1P23921 792 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 GBP1P32455 592 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 EIF4A3P38919 411 aaKnown RBP17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 AMPD2Q01433 879 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 TSR1Q2NL82 804 aaKnown RBP17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 FAM217AQ8IXS0 508 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 EMC1Q8N766 993 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 TC2NQ8N9U0 490 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 ISCUQ9H1K1 167 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 LTB4R2Q9NPC1 389 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 CALCOCO1Q9P1Z2 691 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 STOML2Q9UJZ1 356 aa17.21■□□□□ 0.35
CCDC28A-202ENST00000611852 SYNJ2BP-COX16A0A087WUM0 186 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 SIGLEC16A6NMB1 481 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 M0QYT0 321 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 ADH5P11766 374 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 KRT3P12035 628 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 CHKAP35790 457 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 SLC25A52Q3SY17 297 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 ZC3H12AQ5D1E8 599 aaKnown RBP17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 TPGS1Q6ZTW0 290 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 ZNF687Q8N1G0 1237 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 CPXM2Q8N436 756 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 PJA1Q8NG27 643 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 JOSD2Q8TAC2 188 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 AZIN2Q96A70 460 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 PGAP3Q96FM1 320 aaPredicted RBP17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 NELL2Q99435 816 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 LRFN3Q9BTN0 628 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 SELENOOQ9BVL4 669 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 COX16Q9P0S2 106 aa17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 MRPS17Q9Y2R5 130 aaKnown RBP17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 MTF2Q9Y483 593 aaPredicted RBP17.21■□□□□ 0.34
CCDC28A-202ENST00000611852 SSU72P8A0A1W2PR75 194 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 C2CD4BA6NLJ0 364 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 HOXC11O43248 304 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 AOC1P19801 751 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 RFC1P35251 1148 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 SULT1E1P49888 294 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 CLCN5P51795 746 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 VCPP55072 806 aaKnown RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 GAD2Q05329 585 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 NME3Q13232 169 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 MAPK8IP2Q13387 824 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 UBXN2BQ14CS0 331 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 PON2Q15165 354 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 ASTE1Q2TB18 679 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 PPP1R15BQ5SWA1 713 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 ADGRF1Q5T601 910 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 NAIF1Q69YI7 327 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 ASTLQ6HA08 431 aaPredicted RBP17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 DNAJC24Q6P3W2 148 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 RXFP2Q8WXD0 754 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 CFAP57Q96MR6 1250 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 TBCBQ99426 244 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 CHP1Q99653 195 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 OSBPL6Q9BZF3 934 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 PIGVQ9NUD9 493 aa17.2■□□□□ 0.34
CCDC28A-202ENST00000611852 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms