RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 A0A1W2PQH9 124 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 CHADO15335 359 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 SART1O43290 800 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 TLR5O60602 858 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 MBL2P11226 248 aaPredicted RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RALAP11233 206 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RARGP13631 454 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 LCP1P13796 627 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 TNFAIP3P21580 790 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 ATP5C1P36542 298 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RGS7P49802 495 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 HADHBP55084 474 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 SNX16P57768 344 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 GPC5P78333 572 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 KLHDC10Q6PID8 442 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 DDX42Q86XP3 938 aaKnown RBP eCLIP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 SYCE1Q8N0S2 351 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 ACTRT1Q8TDG2 376 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 EPS8L1Q8TE68 723 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 AENQ8WTP8 325 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RFFLQ8WZ73 363 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 IRGQQ8WZA9 623 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 IRF7Q92985 503 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RSPRY1Q96DX4 576 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 CALR3Q96L12 384 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 AGPAT1Q99943 283 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 NACA2Q9H009 215 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RNF38Q9H0F5 515 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 SMG9Q9H0W8 520 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 EPHX3Q9H6B9 360 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 CCSER2Q9H7U1 834 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 BRD9Q9H8M2 597 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 NMUR1Q9HB89 426 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 RBM12Q9NTZ6 932 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 THG1LQ9NWX6 298 aaKnown RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 SMARCAL1Q9NZC9 954 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 WNT16Q9UBV4 365 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 CCL26Q9Y258 94 aa9.22□□□□□ -0.93
SMAD4-217ENST00000611848 FARP1Q9Y4F1 1045 aaPredicted RBP9.22□□□□□ -0.93
SMAD4-217ENST00000611848 ANKRD62A6NC57 917 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 COCHO43405 550 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 NARSO43776 548 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 CFHP08603 1231 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 OAS2P29728 719 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 GDI1P31150 447 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 CDH5P33151 784 aaPredicted RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 NOP2P46087 812 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 PGFP49763 221 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 DAOAP59103 153 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 YWHAGP61981 247 aaKnown RBP eCLIP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 USP4Q13107 963 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 PDCLQ13371 301 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 GRM2Q14416 872 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 ZNF77Q15935 545 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 BTBD8Q5XKL5 378 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 TRIM67Q6ZTA4 783 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 SCD5Q86SK9 330 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 TMEM110Q86TL2 294 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 NOP9Q86U38 636 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 NT5DC3Q86UY8 548 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 DNAAF5Q86Y56 855 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 PASD1Q8IV76 773 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 TMEM35BQ8NCS4 154 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 SH3RF2Q8TEC5 729 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 DDX1Q92499 740 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 DNASE1L2Q92874 299 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 LRRC3BQ96PB8 259 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 ISCUQ9H1K1 167 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 SMOC2Q9H3U7 446 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 TRPV5Q9NQA5 729 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 ABCC13Q9NSE7 274 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 OSER1Q9NX31 292 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 DMGDHQ9UI17 866 aaKnown RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 PACSIN2Q9UNF0 486 aaPredicted RBP9.21□□□□□ -0.93
SMAD4-217ENST00000611848 CPQQ9Y646 472 aa9.21□□□□□ -0.93
SMAD4-217ENST00000611848 KIF26AQ9ULI4 1882 aaPredicted RBP9.21□□□□□ -0.94
SMAD4-217ENST00000611848 H3BQF6 201 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 LEFTY2O00292 366 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 LSM8O95777 96 aaKnown RBP9.2□□□□□ -0.94
SMAD4-217ENST00000611848 MMEP08473 750 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 MYBL2P10244 700 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 CDR2Q01850 454 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 GPS2Q13227 327 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 TAF3Q5VWG9 929 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 TRIM72Q6ZMU5 477 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 BHLHA9Q7RTU4 235 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 RASGEF1CQ8N431 466 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 WDTC1Q8N5D0 677 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 C1orf131Q8NDD1 294 aaKnown RBP9.2□□□□□ -0.94
SMAD4-217ENST00000611848 SLC35G2Q8TBE7 412 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 IPO4Q8TEX9 1081 aaKnown RBP9.2□□□□□ -0.94
SMAD4-217ENST00000611848 CTNNBL1Q8WYA6 563 aaPredicted RBP9.2□□□□□ -0.94
SMAD4-217ENST00000611848 HES6Q96HZ4 224 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 C1QTNF1Q9BXJ1 281 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 MIS12Q9H081 205 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 ACBD3Q9H3P7 528 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 GDF3Q9NR23 364 aa9.2□□□□□ -0.94
SMAD4-217ENST00000611848 OLA1Q9NTK5 396 aaKnown RBP9.2□□□□□ -0.94
SMAD4-217ENST00000611848 STIM2Q9P246 746 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms