RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 IGLV3-27P01718 113 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 KLKB1P03952 638 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 GLI1P08151 1106 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 SOX5P35711 763 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 CCR3P51677 355 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 RING1Q06587 406 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 FMNL3Q8IVF7 1028 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 CPXM2Q8N436 756 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 CCDC26Q8TAB7 109 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 EZH1Q92800 747 aaPredicted RBP16.89■□□□□ 0.29
LSM4-206ENST00000600289 NELL1Q92832 810 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 PPP1R13BQ96KQ4 1090 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 CPXM1Q96SM3 734 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 CBX8Q9HC52 389 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 FBRSL1Q9HCM7 1045 aaKnown RBP16.89■□□□□ 0.29
LSM4-206ENST00000600289 PARD6AQ9NPB6 346 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 RBM12Q9NTZ6 932 aaKnown RBP16.89■□□□□ 0.29
LSM4-206ENST00000600289 STOML2Q9UJZ1 356 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 NOCTQ9UK39 431 aaKnown RBP16.89■□□□□ 0.29
LSM4-206ENST00000600289 CEP295Q9C0D2 2601 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 RALGAPA1Q6GYQ0 2036 aa16.89■□□□□ 0.29
LSM4-206ENST00000600289 A0A1B0GTH6 734 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 A0A1W2PQC6 194 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 EGFP01133 1207 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 TDGF1P13385 188 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 CORO1AP31146 461 aaKnown RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 CHKAP35790 457 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 STAT1P42224 750 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 PREPLQ4J6C6 727 aaPredicted RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 FILIP1LQ4L180 1135 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 NAIF1Q69YI7 327 aaPredicted RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 Q6ZS52 159 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 NOP9Q86U38 636 aaKnown RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 TMEM25Q86YD3 366 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 ZDHHC17Q8IUH5 632 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 PASD1Q8IV76 773 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 PHTF2Q8N3S3 785 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 TMEM35BQ8NCS4 154 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 C1orf131Q8NDD1 294 aaKnown RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 SPAG5Q96R06 1193 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 PNKPQ96T60 521 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 FAM126AQ9BYI3 521 aaPredicted RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 IRX2Q9BZI1 471 aaPredicted RBP16.88■□□□□ 0.29
LSM4-206ENST00000600289 POPDC2Q9HBU9 364 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 WDR35Q9P2L0 1181 aa16.88■□□□□ 0.29
LSM4-206ENST00000600289 TEX33O43247 280 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 CACNG3O60359 315 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 ATG13O75143 517 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 GABRB2P47870 512 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 ZNF445P59923 1031 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 YWHAZP63104 245 aaKnown RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 TPM4P67936 248 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 PPP2R5DQ14738 602 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 PTPN20Q4JDL3 420 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 C12orf40Q86WS4 652 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 ZNF397Q8NF99 534 aaPredicted RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 IPO4Q8TEX9 1081 aaKnown RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 AZIN2Q96A70 460 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 PCMTD1Q96MG8 357 aaPredicted RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 SERPINB11Q96P15 392 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 SLC2A13Q96QE2 648 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 NLRC4Q9NPP4 1024 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 SFMBT1Q9UHJ3 866 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 AGO1Q9UL18 857 aaKnown RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 MYO6Q9UM54 1294 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 SMG5Q9UPR3 1016 aaKnown RBP16.87■□□□□ 0.29
LSM4-206ENST00000600289 EML5Q05BV3 1969 aa16.87■□□□□ 0.29
LSM4-206ENST00000600289 ATG2BQ96BY7 2078 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 GFRA2O00451 464 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 HSF2BPO75031 334 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 GFPT2O94808 682 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 PENKP01210 267 aaPredicted RBP16.86■□□□□ 0.29
LSM4-206ENST00000600289 IGLV3-25P01717 112 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 NCAM1P13591 858 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 SCNN1AP37088 669 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 HARS2P49590 506 aaKnown RBP16.86■□□□□ 0.29
LSM4-206ENST00000600289 CDR2Q01850 454 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 EFHC1Q5JVL4 640 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 NUGGCQ68CJ6 796 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 OLFML1Q6UWY5 402 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 TOGARAM2Q6ZUX3 1019 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 SLC26A9Q7LBE3 791 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 DQX1Q8TE96 717 aaKnown RBP16.86■□□□□ 0.29
LSM4-206ENST00000600289 FAM149B1Q96BN6 582 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 BBS2Q9BXC9 721 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 EPC1Q9H2F5 836 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 TJP2Q9UDY2 1190 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 USP18Q9UMW8 372 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 TLR6Q9Y2C9 796 aa16.86■□□□□ 0.29
LSM4-206ENST00000600289 CNOT1A5YKK6 2376 aaKnown RBP16.86■□□□□ 0.29
LSM4-206ENST00000600289 K7EQS6 105 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 MSI1O43347 362 aaKnown RBP16.85■□□□□ 0.29
LSM4-206ENST00000600289 RNF40O75150 1001 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 TULP3O75386 442 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 KAT7O95251 611 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 ERBB2P04626 1255 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 CYP1A1P04798 512 aaPredicted RBP16.85■□□□□ 0.29
LSM4-206ENST00000600289 APODP05090 189 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 HMBSP08397 361 aa16.85■□□□□ 0.29
LSM4-206ENST00000600289 CHRM1P11229 460 aaPredicted RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms