RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FRMD4BQ9Y2L6 1034 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 PCDHB9Q9Y5E1 797 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 USP3Q9Y6I4 520 aa13.15□□□□□ -0.3
TRIM28-212ENST00000597995 A0A1B0GTW7 788 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 MDM4O15151 490 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 SH3BP5O60239 455 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 KIF20AO95235 890 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 KLKB1P03952 638 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 TRIM49P0CI25 452 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 TRIM49CP0CI26 452 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 PRCPP42785 496 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 MFAP3P55082 362 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 RING1Q06587 406 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 ENPEPQ07075 957 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 FUT11Q495W5 492 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 FYB2Q5VWT5 728 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 UCMAQ8WVF2 138 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 CCDC47Q96A33 483 aaKnown RBP13.14□□□□□ -0.31
TRIM28-212ENST00000597995 EEF2KMTQ96G04 330 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 DUSP16Q9BY84 665 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 SLC6A17Q9H1V8 727 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 APOBEC3GQ9HC16 384 aaKnown RBP13.14□□□□□ -0.31
TRIM28-212ENST00000597995 CD93Q9NPY3 652 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 PLK2Q9NYY3 685 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 THAP10Q9P2Z0 257 aaPredicted RBP13.14□□□□□ -0.31
TRIM28-212ENST00000597995 NUDT5Q9UKK9 219 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 BAHCC1Q9P281 2608 aa13.14□□□□□ -0.31
TRIM28-212ENST00000597995 CILPO75339 1184 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 IGLV3-19P01714 112 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 MAOBP27338 520 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 OXTRP30559 389 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 GCLMP48507 274 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 PMS1P54277 932 aaKnown RBP13.13□□□□□ -0.31
TRIM28-212ENST00000597995 GRIK2Q13002 908 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 ADAM9Q13443 819 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 COL9A2Q14055 689 aaPredicted RBP13.13□□□□□ -0.31
TRIM28-212ENST00000597995 GEN1Q17RS7 908 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 GLRX5Q86SX6 157 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 TMPRSS6Q8IU80 811 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 NAXDQ8IW45 347 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 FAM186BQ8IYM0 893 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 TAS1R2Q8TE23 839 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 BHMTQ93088 406 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 JAKMIP2Q96AA8 810 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 ERLEC1Q96DZ1 483 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 P2RY11Q96G91 374 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 TOE1Q96GM8 510 aaKnown RBP13.13□□□□□ -0.31
TRIM28-212ENST00000597995 FAXDC2Q96IV6 333 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 PIWIL1Q96J94 861 aaKnown RBP13.13□□□□□ -0.31
TRIM28-212ENST00000597995 CAMK1GQ96NX5 476 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 SLC2A11Q9BYW1 496 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 UBXN6Q9BZV1 441 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 NIF3L1Q9GZT8 377 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 MKRN2Q9H000 416 aaKnown RBP13.13□□□□□ -0.31
TRIM28-212ENST00000597995 LHX6Q9UPM6 363 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 WDFY3Q8IZQ1 3526 aa13.13□□□□□ -0.31
TRIM28-212ENST00000597995 DSPP15924 2871 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 METTL12A8MUP2 240 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 MEI4A8MW99 385 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 TAF4O00268 1085 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 TIMM44O43615 452 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 SYNCRIPO60506 623 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 GADD45BO75293 160 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 CYBBP04839 570 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 FTH1P19P0C7X4 201 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 ZNF883P0CG24 379 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 NCAM1P13591 858 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 HOXB3P14651 431 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 PSMC2P35998 433 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 IL12RB1P42701 662 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 TPMTP51580 245 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 EIF4HQ15056 248 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 EDRF1Q3B7T1 1238 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 COBLL1Q53SF7 1204 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 ZNF658Q5TYW1 1059 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 IL27RAQ6UWB1 636 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 INTS8Q75QN2 995 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 PROSER1Q86XN7 944 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 ARHGAP18Q8N392 663 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 CPXM2Q8N436 756 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 TTC39CQ8N584 583 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 CCDC150Q8NCX0 1101 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 PRCCQ92733 491 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 SIPA1Q96FS4 1042 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 TIGD1Q96MW7 591 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 GSDMAQ96QA5 445 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 NUP58Q9BVL2 599 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 GPR174Q9BXC1 333 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 PCED1AQ9H1Q7 454 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 ELOVL2Q9NXB9 296 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 KIAA1522Q9P206 1035 aaPredicted RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 APOBEC2Q9Y235 224 aaKnown RBP13.12□□□□□ -0.31
TRIM28-212ENST00000597995 FREM2Q5SZK8 3169 aa13.12□□□□□ -0.31
TRIM28-212ENST00000597995 GOLGA6L4A6NEF3 574 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 KCNJ18B7U540 433 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 CBFA2T3O75081 653 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 CD58P19256 250 aa13.11□□□□□ -0.31
TRIM28-212ENST00000597995 RPL13P26373 211 aaKnown RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 CORO1AP31146 461 aaKnown RBP13.11□□□□□ -0.31
TRIM28-212ENST00000597995 ZNF234Q14588 700 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms