RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FGF14Q92915 247 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 MCRS1Q96EZ8 462 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 NOX5Q96PH1 765 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CHRDQ9H2X0 955 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 DMAP1Q9NPF5 467 aaPredicted RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 MAN1C1Q9NR34 630 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 IL37Q9NZH6 218 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 HSFX1Q9UBD0 423 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 CNOT8Q9UFF9 292 aaKnown RBP9.9□□□□□ -0.82
TRIM28-208ENST00000597172 MAFFQ9ULX9 164 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 USP3Q9Y6I4 520 aa9.9□□□□□ -0.82
TRIM28-208ENST00000597172 PTPRQQ9UMZ3 2332 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 TRIM66O15016 1216 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ZSCAN12O43309 604 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 HYAL3O43820 417 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 GJB6O95452 261 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 CAPNS1P04632 268 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ADH1AP07327 375 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 MYBL1P10243 752 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 CEACAM1P13688 526 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ATF6P18850 670 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ACADSBP45954 432 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 CXCL12P48061 93 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 TUFMP49411 452 aaKnown RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 TKTL1P51854 596 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 GSCP56915 257 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 USP46P62068 366 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 SLC6A3Q01959 620 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ADIGQ0VDE8 80 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 MAMLD1Q13495 774 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 TAF5Q15542 800 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 MGAT5BQ3V5L5 792 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PPP1R15BQ5SWA1 713 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PM20D1Q6GTS8 502 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 OR6B2Q6IFH4 312 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 FAM183BPQ6ZVS7 135 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 BHLHA9Q7RTU4 235 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF605Q86T29 641 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ZSCAN30Q86W11 494 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 STKLD1Q8NE28 680 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 SCAMP5Q8TAC9 235 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 SLC35G2Q8TBE7 412 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 HNRNPLLQ8WVV9 542 aaKnown RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ZNF653Q96CK0 615 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PIWIL1Q96J94 861 aaKnown RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 LRIG1Q96JA1 1093 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 LOXL4Q96JB6 756 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 SPATA17Q96L03 361 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 SEPT5Q99719 369 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 IER2Q9BTL4 223 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 IRX2Q9BZI1 471 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 MIS12Q9H081 205 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PIDD1Q9HB75 910 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 CYP4F11Q9HBI6 524 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PNPLA8Q9NP80 782 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 LZTFL1Q9NQ48 299 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 AVENQ9NQS1 362 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 MYO1AQ9UBC5 1043 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 PAXBP1Q9Y5B6 917 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 ZFP37Q9Y6Q3 630 aaPredicted RBP9.89□□□□□ -0.83
TRIM28-208ENST00000597172 CREBBPQ92793 2442 aa9.89□□□□□ -0.83
TRIM28-208ENST00000597172 NCANO14594 1321 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 A0A0A6YYK5 440 aaPredicted RBP9.88□□□□□ -0.83
TRIM28-208ENST00000597172 SIGLEC16A6NMB1 481 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 C4orf47A7E2U8 309 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 GOLGA8SH3BPF8 625 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 RFPL2O75678 378 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 C1RP00736 705 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 USP17L7P0C7H9 530 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 PGFP49763 221 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 SLC5A3P53794 718 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 RPL7AP62424 266 aaKnown RBP9.88□□□□□ -0.83
TRIM28-208ENST00000597172 RPL10AP62906 217 aaKnown RBP9.88□□□□□ -0.83
TRIM28-208ENST00000597172 KIF5AQ12840 1032 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 LIN9Q5TKA1 542 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 DAB2IPQ5VWQ8 1189 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 ELMSAN1Q6PJG2 1045 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 OLFML1Q6UWY5 402 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 LONP2Q86WA8 852 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 NUP93Q8N1F7 819 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 SCML4Q8N228 414 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 C3orf20Q8ND61 904 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 GIPC2Q8TF65 315 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 CTNNBL1Q8WYA6 563 aaPredicted RBP9.88□□□□□ -0.83
TRIM28-208ENST00000597172 TRIM11Q96F44 468 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 NUP85Q9BW27 656 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 ULBP1Q9BZM6 244 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 TRIM7Q9C029 511 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 SYNCQ9H7C4 482 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 LRRC4Q9HBW1 653 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 OSGEPQ9NPF4 335 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 LUC7LQ9NQ29 371 aaKnown RBP9.88□□□□□ -0.83
TRIM28-208ENST00000597172 PARVAQ9NVD7 372 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 WDR35Q9P2L0 1181 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 DPP7Q9UHL4 492 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 TMEM59LQ9UK28 342 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 FBXW11Q9UKB1 542 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 KLK13Q9UKR3 277 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 STRIP2Q9ULQ0 834 aa9.88□□□□□ -0.83
TRIM28-208ENST00000597172 GUCA1BQ9UMX6 200 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms