RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 RESP18Q5W5W9 173 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 TMEM215Q68D42 235 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 PDZD3Q86UT5 571 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 MDM1Q8TC05 714 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 PRCCQ92733 491 aaPredicted RBP10.47□□□□□ -0.73
LIG1-209ENST00000596104 SIPA1Q96FS4 1042 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 NT5C1AQ9BXI3 368 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 MIR1-1HGQ9H1L0 117 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 GAREM1Q9H706 876 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 CYP3A43Q9HB55 503 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 TM7SF3Q9NS93 570 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 ELOVL2Q9NXB9 296 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 AGO1Q9UL18 857 aaKnown RBP10.47□□□□□ -0.73
LIG1-209ENST00000596104 ZNF510Q9Y2H8 683 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 SLCO1B1Q9Y6L6 691 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 APC2O95996 2303 aa10.47□□□□□ -0.73
LIG1-209ENST00000596104 SYNCRIPO60506 623 aaKnown RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 CER1O95813 267 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 ATXN1LP0C7T5 689 aaKnown RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 RALAP11233 206 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 MATKP42679 507 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 HLA-BQ31612 363 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 PPP1R26Q5T8A7 1209 aaPredicted RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 IL27RAQ6UWB1 636 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 TMPRSS7Q7RTY8 843 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 ANKS1BQ7Z6G8 1248 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 TADA2BQ86TJ2 420 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 FAM217AQ8IXS0 508 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 CPXM2Q8N436 756 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 TAS1R2Q8TE23 839 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 SETD7Q8WTS6 366 aaKnown RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 UCMAQ8WVF2 138 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 SORCS1Q8WY21 1168 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 CDK5RAP1Q96SZ6 601 aaKnown RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 NUP58Q9BVL2 599 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 DUSP16Q9BY84 665 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 DCLK3Q9C098 648 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 NIF3L1Q9GZT8 377 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 PCED1AQ9H1Q7 454 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 EXOC1Q9NV70 894 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 DKK4Q9UBT3 224 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 EIF2B4Q9UI10 523 aaKnown RBP10.46□□□□□ -0.73
LIG1-209ENST00000596104 RASAL2Q9UJF2 1139 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 PCDHA7Q9UN72 937 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 PCDHGB2Q9Y5G2 931 aa10.46□□□□□ -0.73
LIG1-209ENST00000596104 ADAMTS9Q9P2N4 1935 aa10.46□□□□□ -0.74
LIG1-209ENST00000596104 NBEAQ8NFP9 2946 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 A0A1B0GVT2 93 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 K7ELQ4 463 aaPredicted RBP10.45□□□□□ -0.74
LIG1-209ENST00000596104 MAPK13O15264 365 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 FLRT2O43155 660 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 ACTN4O43707 911 aaKnown RBP10.45□□□□□ -0.74
LIG1-209ENST00000596104 HMBSP08397 361 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 SLFN14P0C7P3 912 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 TRIM49P0CI25 452 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 TRIM49CP0CI26 452 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 TRIM21P19474 475 aaKnown RBP10.45□□□□□ -0.74
LIG1-209ENST00000596104 VAMP7P51809 220 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 PPP3CAQ08209 521 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 EFEMP1Q12805 493 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 CAMK2GQ13555 558 aaPredicted RBP10.45□□□□□ -0.74
LIG1-209ENST00000596104 KMT5BQ4FZB7 885 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 CEP135Q66GS9 1140 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 CACUL1Q86Y37 369 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 DENND1CQ8IV53 801 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 SPRYD3Q8NCJ5 442 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 PAGE5Q96GU1 130 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 CDC6Q99741 560 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 SLC2A11Q9BYW1 496 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 FAM13BQ9NYF5 915 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 MARCH2Q9P0N8 246 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 SERTAD1Q9UHV2 236 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 TRAF3IP3Q9Y228 551 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 BTBD3Q9Y2F9 522 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 RAXQ9Y2V3 346 aa10.45□□□□□ -0.74
LIG1-209ENST00000596104 SLC12A8A0AV02 714 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 TIMM44O43615 452 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 KIF20AO95235 890 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 CYBBP04839 570 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 EPHX1P07099 455 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 ACADMP11310 421 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 HLA-EP13747 358 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 CD58P19256 250 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 HOXD9P28356 352 aaPredicted RBP10.44□□□□□ -0.74
LIG1-209ENST00000596104 ACSL1P33121 698 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 ME1P48163 572 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 GCLMP48507 274 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 CSNK1EP49674 416 aaKnown RBP10.44□□□□□ -0.74
LIG1-209ENST00000596104 CAMK2BQ13554 666 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 E2F5Q15329 346 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 TRIP4Q15650 581 aaPredicted RBP10.44□□□□□ -0.74
LIG1-209ENST00000596104 KIF19Q2TAC6 998 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 RAB41Q5JT25 222 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 FOXD4L5Q5VV16 416 aaPredicted RBP10.44□□□□□ -0.74
LIG1-209ENST00000596104 SERPINA13PQ6UXR4 307 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 BHLHA9Q7RTU4 235 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 PIGZQ86VD9 579 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 MARCH9Q86YJ5 346 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 CEP57L1Q8IYX8 460 aa10.44□□□□□ -0.74
LIG1-209ENST00000596104 OR2T3Q8NH03 318 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms