RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 KIR2DL1P43626 348 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-206ENST00000595974 DGKGP49619 791 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 SNX16P57768 344 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 KLHL40Q2TBA0 621 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 ANO6Q4KMQ2 910 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 C10orf76Q5T2E6 689 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 FYB2Q5VWT5 728 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 NUGGCQ68CJ6 796 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 TRMT11Q7Z4G4 463 aaKnown RBP16.9■□□□□ 0.3
TRIM28-206ENST00000595974 UNC45BQ8IWX7 931 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 WDTC1Q8N5D0 677 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 C1orf131Q8NDD1 294 aaKnown RBP16.9■□□□□ 0.3
TRIM28-206ENST00000595974 KCNV2Q8TDN2 545 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 DQX1Q8TE96 717 aaKnown RBP16.9■□□□□ 0.3
TRIM28-206ENST00000595974 IPO4Q8TEX9 1081 aaKnown RBP16.9■□□□□ 0.3
TRIM28-206ENST00000595974 PPP1R13BQ96KQ4 1090 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 HHIPQ96QV1 700 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 CPXM1Q96SM3 734 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 HSD3B7Q9H2F3 369 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 POPDC2Q9HBU9 364 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 STOML2Q9UJZ1 356 aa16.9■□□□□ 0.3
TRIM28-206ENST00000595974 LRRC10BA6NIK2 292 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 CAPN9O14815 690 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 GLI1P08151 1106 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 CYP11B1P15538 503 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 CDK11BP21127 795 aaKnown RBP16.89■□□□□ 0.29
TRIM28-206ENST00000595974 TIE1P35590 1138 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 TBX4P57082 545 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 IL17RCQ8NAC3 791 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 BHMTQ93088 406 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 FAM207AQ9NSI2 230 aaPredicted RBP16.89■□□□□ 0.29
TRIM28-206ENST00000595974 ASNSD1Q9NWL6 643 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 PLK2Q9NYY3 685 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 TJP2Q9UDY2 1190 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 FBXO10Q9UK96 956 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 RAB23Q9ULC3 237 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 TLR6Q9Y2C9 796 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 SIK3Q9Y2K2 1263 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 PLXND1Q9Y4D7 1925 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 FRYLO94915 3013 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 WDR87Q6ZQQ6 2873 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 ZNF292O60281 2723 aa16.89■□□□□ 0.29
TRIM28-206ENST00000595974 SDK1Q7Z5N4 2213 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 TRIM24O15164 1050 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 KLF8O95600 359 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 CDH5P33151 784 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 KLK7P49862 253 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 DGKEP52429 567 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 YWHAZP63104 245 aaKnown RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 SYCP1Q15431 976 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 CRY1Q16526 586 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 MPPE1Q53F39 396 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 EOGTQ5NDL2 527 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 ADGRF1Q5T601 910 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 APTXQ7Z2E3 356 aaKnown RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 CCDC33Q8N5R6 958 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 ALLCQ8N6M5 410 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 ZNF513Q8N8E2 541 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 TMEM35BQ8NCS4 154 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 TSTD1Q8NFU3 115 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 RUBCNQ92622 972 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 ERGIC2Q96RQ1 377 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 IRX2Q9BZI1 471 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 PDCL3Q9H2J4 239 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 POLR3BQ9NW08 1133 aaPredicted RBP16.88■□□□□ 0.29
TRIM28-206ENST00000595974 EBF1Q9UH73 591 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 NAALADL1Q9UQQ1 740 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 SLC27A6Q9Y2P4 619 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 STARD13Q9Y3M8 1113 aa16.88■□□□□ 0.29
TRIM28-206ENST00000595974 ANTXRLA6NF34 631 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SMTNL1A8MU46 457 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 GFRA2O00451 464 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 AXIN1O15169 862 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 HSF2BPO75031 334 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 LSM8O95777 96 aaKnown RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 CISD3P0C7P0 127 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 HOXC13P31276 330 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 PXNP49023 591 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SLC11A2P49281 568 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 POLR2FP61218 127 aaKnown RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 UBXN1Q04323 297 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 PTPN20Q4JDL3 420 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 EFHC1Q5JVL4 640 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 EMC10Q5UCC4 262 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 OLFML1Q6UWY5 402 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 TOGARAM2Q6ZUX3 1019 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 TAC4Q86UU9 113 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 TXNDC5Q8NBS9 432 aaKnown RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 NEK11Q8NG66 645 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 EPS8L1Q8TE68 723 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 DDI1Q8WTU0 396 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 GAB3Q8WWW8 586 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 AZIN2Q96A70 460 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 P2RY11Q96G91 374 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 PIWIL1Q96J94 861 aaKnown RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 FCRL2Q96LA5 508 aaPredicted RBP16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SPAG5Q96R06 1193 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SLC2A11Q9BYW1 496 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SYNCQ9H7C4 482 aa16.87■□□□□ 0.29
TRIM28-206ENST00000595974 SGK1O00141 431 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms