RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 XAB2Q9HCS7 855 aaKnown RBP10.15□□□□□ -0.79
LIG3-216ENST00000593099 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.15□□□□□ -0.79
LIG3-216ENST00000593099 TBC1D14Q9P2M4 693 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 OR12D3Q9UGF7 316 aa10.15□□□□□ -0.79
LIG3-216ENST00000593099 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.15□□□□□ -0.79
LIG3-216ENST00000593099 IGKV6-21A0A0C4DH24 114 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 MYBPHLA2RUH7 354 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 FGF10O15520 208 aaPredicted RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 TBC1D4O60343 1298 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 FAM163BP0C2L3 166 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 TGM2P21980 687 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 AMPD1P23109 780 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 PCK1P35558 622 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 COILP38432 576 aaPredicted RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 MATKP42679 507 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 FNDC3BQ53EP0 1204 aaKnown RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 NXNQ6DKJ4 435 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 CCDC121Q6ZUS5 278 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 C16orf59Q7L2K0 433 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 JAMLQ86YT9 394 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 CALML6Q8TD86 181 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 TOX2Q96NM4 488 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 VPS11Q9H270 941 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 ADAMTS10Q9H324 1103 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 PRDM16Q9HAZ2 1276 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 ASB3Q9Y575 518 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 NDUFAB1O14561 156 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 SCAMP3O14828 347 aaKnown RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 SPTLC1O15269 473 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 SNX2O60749 519 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 SCNN1BP51168 640 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 MAMLD1Q13495 774 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 ALS2CLQ60I27 953 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 RAB42Q8N4Z0 105 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 DCLK2Q8N568 766 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 ACTL9Q8TC94 416 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 PCED1BQ96HM7 432 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 FBXL18Q96ME1 805 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 WBP1LQ9NX94 342 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 ZC3H7BQ9UGR2 993 aaKnown RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 SHANK3Q9BYB0 1731 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 FAM47DPA6NHR8 397 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 C2orf81A6NN90 581 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 ZNF263O14978 683 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 SERPINF2P08697 491 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 NUMBP49757 651 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 SLC5A3P53794 718 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 PMS2P54278 862 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 RAD23BP54727 409 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 C15orf59Q2T9L4 293 aaPredicted RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 RARS2Q5T160 578 aaKnown RBP10.14□□□□□ -0.79
LIG3-216ENST00000593099 SLC24A3Q9HC58 644 aa10.14□□□□□ -0.79
LIG3-216ENST00000593099 CCDC78A2IDD5 438 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 DNAJC8O75937 253 aaPredicted RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 FGF18O76093 207 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 IGSF6O95976 241 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 ERBB2P04626 1255 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 NSUN2Q08J23 767 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIG3-216ENST00000593099 MAP3K21Q5TCX8 1036 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 SPDYE1Q8NFV5 336 aaPredicted RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 N4BP2L2Q92802 583 aaPredicted RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 TRIM51Q9BSJ1 452 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 BBS2Q9BXC9 721 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 UPF3AQ9H1J1 476 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 INTS9Q9NV88 658 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 GMIPQ9P107 970 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 UBA2Q9UBT2 640 aaPredicted RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 COQ4Q9Y3A0 265 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 MYO9BQ13459 2157 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 ADH1CP00326 375 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 PPP3CCP48454 512 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 BRMS1LQ5PSV4 323 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 REXO1L1PQ8IX06 675 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 ZSWIM2Q8NEG5 633 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 SH3KBP1Q96B97 665 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 RBM15Q96T37 977 aaKnown RBP eCLIP10.13□□□□□ -0.79
LIG3-216ENST00000593099 ADGRE3Q9BY15 652 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 TLR9Q9NR96 1032 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CRLS1Q9UJA2 301 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 NEU2Q9Y3R4 380 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 PDE4DIPQ5VU43 2346 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CACNA1SQ13698 1873 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 MBLAC1A4D2B0 266 aaPredicted RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 COPEO14579 308 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 AP5Z1O43299 807 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 PPP1R37O75864 691 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CHRNA1P02708 482 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 NR2C2P49116 596 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 SMAD1Q15797 465 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 SYTL3Q4VX76 610 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 KCTD16Q68DU8 428 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CCDC33Q8N5R6 958 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 TDRD5Q8NAT2 981 aaKnown RBP10.13□□□□□ -0.79
LIG3-216ENST00000593099 BLOC1S5Q8TDH9 187 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 IRGQQ8WZA9 623 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 PTPRN2Q92932 1015 aa10.13□□□□□ -0.79
LIG3-216ENST00000593099 CLDND1Q9NY35 253 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms