RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MGEA5O60502 916 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 AVILO75366 819 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 FBXO21O94952 628 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 TAC1P20366 129 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 FOXN2P32314 431 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 MSH2P43246 934 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 ACLYP53396 1101 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 MAP3K7CLP57077 242 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 DSC3Q14574 896 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 MAP3K21Q5TCX8 1036 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 FAXCQ5TGI0 409 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 FAM35AQ86V20 835 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 CAND1Q86VP6 1230 aaKnown RBP20.39■□□□□ 0.85
CLIP3-206ENST00000593074 VPS52Q8N1B4 723 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 LRRN4Q8WUT4 740 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 ARHGEF4Q9NR80 690 aa20.39■□□□□ 0.85
CLIP3-206ENST00000593074 DNAH12Q6ZR08 3092 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 HACD1B0YJ81 288 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 DGKIO75912 1065 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 APRTP07741 180 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 AMPD1P23109 780 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 RPA3P35244 121 aaPredicted RBP20.38■□□□□ 0.85
CLIP3-206ENST00000593074 MAGEA3P43357 314 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 TKTL1P51854 596 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 SPARCL1Q14515 664 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 FAM26DQ5JW98 314 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 FAM182AQ5T1J6 154 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 RGS9BPQ6ZS82 235 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 PGBD4Q96DM1 585 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 ADAM2Q99965 735 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 MFHAS1Q9Y4C4 1052 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CAPN7Q9Y6W3 813 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 SF3B1O75533 1304 aaKnown RBP eCLIP20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CASTOR2A6NHX0 329 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 DNM1LO00429 736 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 KRT4P19013 534 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 TPSB2P20231 275 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CA4P22748 312 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 TPSAB1Q15661 275 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 TRIM71Q2Q1W2 868 aaKnown RBP20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CD99L2Q8TCZ2 262 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 SLC44A1Q8WWI5 657 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 LRRC39Q96DD0 335 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 PCED1BQ96HM7 432 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 SMOQ99835 787 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CDH9Q9ULB4 789 aa20.38■□□□□ 0.85
CLIP3-206ENST00000593074 CASP8AP2Q9UKL3 1982 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 PIAS1O75925 651 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 METTL18O95568 372 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 C1QAP02745 245 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 IBSPP21815 317 aaPredicted RBP20.37■□□□□ 0.85
CLIP3-206ENST00000593074 DAOAP59103 153 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 ZKSCAN8Q15776 578 aaPredicted RBP20.37■□□□□ 0.85
CLIP3-206ENST00000593074 UPP1Q16831 310 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 RAB41Q5JT25 222 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 SYPL2Q5VXT5 272 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 HEATR6Q6AI08 1181 aaKnown RBP20.37■□□□□ 0.85
CLIP3-206ENST00000593074 HFE2Q6ZVN8 426 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 BZW1Q7L1Q6 419 aaKnown RBP20.37■□□□□ 0.85
CLIP3-206ENST00000593074 SPATA21Q7Z572 469 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 RNF139Q8WU17 664 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 TIMM13Q9Y5L4 95 aaPredicted RBP20.37■□□□□ 0.85
CLIP3-206ENST00000593074 PTCH2Q9Y6C5 1203 aa20.37■□□□□ 0.85
CLIP3-206ENST00000593074 H3BRJ5 948 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 M0QYT0 321 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 NRP1O14786 923 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 MFSD11O43934 449 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 TRPA1O75762 1119 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 AP1G2O75843 785 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 ZWINTO95229 277 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 FYNP06241 537 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SKIP12755 728 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 YWHAGP61981 247 aaKnown RBP eCLIP20.36■□□□□ 0.85
CLIP3-206ENST00000593074 MTFR1Q15390 333 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 KBTBD12Q3ZCT8 623 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 CGB2Q6NT52 195 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 ZNF534Q76KX8 674 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 ZMIZ2Q8NF64 920 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 RAET1EQ8TD07 263 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 TFB1MQ8WVM0 346 aaKnown RBP20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SLC9A7Q96T83 725 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 ULBP1Q9BZM6 244 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 CNGB3Q9NQW8 809 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 TMEM30AQ9NV96 361 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 GRID1Q9ULK0 1009 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 TTLL3Q9Y4R7 772 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SQORQ9Y6N5 450 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 MYBPHLA2RUH7 354 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 C9IYK1 514 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SUN1O94901 812 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 POMCP01189 267 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 VAV1P15498 845 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 AIF1P55008 147 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 SEMA5AQ13591 1074 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 PDK4Q16654 411 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 GPRIN1Q7Z2K8 1008 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 TRPM8Q7Z2W7 1104 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 ALKBH8Q96BT7 664 aaKnown RBP20.36■□□□□ 0.85
CLIP3-206ENST00000593074 GRAMD1AQ96CP6 724 aa20.36■□□□□ 0.85
CLIP3-206ENST00000593074 PAAF1Q9BRP4 392 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms