RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 AIPL1Q9NZN9 384 aa12.4□□□□□ -0.42
LIG3-213ENST00000590630 STOML2Q9UJZ1 356 aa12.4□□□□□ -0.42
LIG3-213ENST00000590630 FANCMQ8IYD8 2048 aa12.4□□□□□ -0.42
LIG3-213ENST00000590630 A0A1W2PQJ5 194 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 NEDD8-MDP1E9PL57 170 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 CBFA2T2O43439 604 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 LAMTOR5O43504 91 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 CACNG3O60359 315 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 DAB1O75553 588 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 TRUB2O95900 331 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 EGFP01133 1207 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 IGLV3-25P01717 112 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 UNGP13051 313 aaPredicted RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 TYRP14679 529 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 MMP8P22894 467 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 NSFP46459 744 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 SLC11A2P49281 568 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 CDK17Q00537 523 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 CENPCQ03188 943 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 TCF15Q12870 199 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 MTAPQ13126 283 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 ANGPT1Q15389 498 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 ADGRF1Q5T601 910 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 SFMBT2Q5VUG0 894 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 NAIF1Q69YI7 327 aaPredicted RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 TPGS1Q6ZTW0 290 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 TAC4Q86UU9 113 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 XYLT1Q86Y38 959 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 SPEM1Q8N4L4 309 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 RNF214Q8ND24 703 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 AZIN2Q96A70 460 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 XPO6Q96QU8 1125 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 PNKPQ96T60 521 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 AGPAT1Q99943 283 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 NUCKS1Q9H1E3 243 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 FBRSL1Q9HCM7 1045 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 RBM12Q9NTZ6 932 aaKnown RBP12.39□□□□□ -0.43
LIG3-213ENST00000590630 RRN3Q9NYV6 651 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 DEC1Q9P2X7 70 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 RAPGEFL1Q9UHV5 662 aa12.39□□□□□ -0.43
LIG3-213ENST00000590630 ITIH6Q6UXX5 1313 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 IRAK2O43187 625 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 TULP3O75386 442 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 GRAP2O75791 330 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 KAT7O95251 611 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 PENKP01210 267 aaPredicted RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 APOEP02649 317 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 CYBBP04839 570 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 APODP05090 189 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 SLC2A3P11169 496 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 GBP1P32455 592 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 NOS2P35228 1153 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 GRIA2P42262 883 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 MATKP42679 507 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 CCR3P51677 355 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 PPP2R5DQ14738 602 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 ASIC2Q16515 512 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 CLEC16AQ2KHT3 1053 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 FAM102AQ5T9C2 384 aaPredicted RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 PPP1R2P3Q6NXS1 205 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 MMS22LQ6ZRQ5 1243 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 Q6ZS52 159 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 NUDT18Q6ZVK8 323 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 ARCQ7LC44 396 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 C12orf40Q86WS4 652 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 DEFB106AQ8N104 65 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 ADAM32Q8TC27 787 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 SLC39A13Q96H72 371 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 FCRL2Q96LA5 508 aaPredicted RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 PCDHB18PQ96TA0 734 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 IRX2Q9BZI1 471 aaPredicted RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 XPO4Q9C0E2 1151 aaKnown RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 FAM204AQ9H8W3 233 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 PRMT8Q9NR22 394 aaPredicted RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 ARHGEF4Q9NR80 690 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 SEPT11Q9NVA2 429 aaKnown RBP12.38□□□□□ -0.43
LIG3-213ENST00000590630 TMEM51Q9NW97 253 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 FBXO4Q9UKT5 387 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 DMDP11532 3685 aa12.38□□□□□ -0.43
LIG3-213ENST00000590630 A0A0A0MRY4 1105 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 ATG13O75143 517 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 RNF40O75150 1001 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 CALB1P05937 261 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 PRKCIP41743 596 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 SLC6A11P48066 632 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 GSCP56915 257 aaPredicted RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 MTA1Q13330 715 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 EIF4EBP2Q13542 120 aaPredicted RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 GAS6Q14393 721 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 ZNF528Q3MIS6 628 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 C2CD6Q53TS8 623 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 FYB2Q5VWT5 728 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 PHF13Q86YI8 300 aaPredicted RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 PHTF2Q8N3S3 785 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 NAT16Q8N8M0 369 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 SLC30A5Q8TAD4 765 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 SYN2Q92777 582 aaPredicted RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 EZH1Q92800 747 aaPredicted RBP12.37□□□□□ -0.43
LIG3-213ENST00000590630 NT5C3BQ969T7 300 aa12.37□□□□□ -0.43
LIG3-213ENST00000590630 DDX50Q9BQ39 737 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms