RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 EPOPA6NHQ4 379 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 IRAK2O43187 625 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 C8AP07357 584 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 ADRA1BP35368 520 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 ARSEP51690 589 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 CLCN4P51793 760 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 DPYSL3Q14195 570 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 DPYSL2Q16555 572 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 TAZQ16635 292 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 CA9Q16790 459 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 ERCC6LQ2NKX8 1250 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 C10orf120Q5SQS8 335 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 TADA2BQ86TJ2 420 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 KLHL7Q8IXQ5 586 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 KRT12Q99456 494 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 PCDH18Q9HCL0 1135 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 NR2E1Q9Y466 385 aa23.12■■□□□ 1.29
ATG4D-209ENST00000588857 RFXAPO00287 272 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 C1RP00736 705 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 IGFBP4P22692 258 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 L1CAMP32004 1257 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 PPP3CCP48454 512 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 EFEMP1Q12805 493 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 KLF1Q13351 362 aaPredicted RBP23.11■■□□□ 1.29
ATG4D-209ENST00000588857 SNX30Q5VWJ9 437 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 VSIG1Q86XK7 387 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 RFX6Q8HWS3 928 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 ELMOD1Q8N336 334 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 HERPUD2Q9BSE4 406 aa23.11■■□□□ 1.29
ATG4D-209ENST00000588857 ANAPC1Q9H1A4 1944 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 ZNF840PA6NDX5 716 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 TLR5O60602 858 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 CCR1P32246 355 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 SCAPQ12770 1279 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 BRMS1LQ5PSV4 323 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 PRELID2Q8N945 189 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 FAM71BQ8TC56 605 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 TKTL2Q9H0I9 626 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 HOMER3Q9NSC5 361 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 MSI1O43347 362 aaKnown RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 PHF2O75151 1096 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 MMRN1Q13201 1228 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 EIF4EBP2Q13542 120 aaPredicted RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 SIX1Q15475 284 aaPredicted RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 PPM1LQ5SGD2 360 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 C8orf74Q6P047 294 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 RTL10Q7L3V2 364 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 ZDHHC14Q8IZN3 488 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 ZNF276Q8N554 614 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 TRAF3IP1Q8TDR0 691 aaPredicted RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 MAGOHBQ96A72 148 aaKnown RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 KCTD15Q96SI1 283 aaPredicted RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 ZNF670Q9BS34 389 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 NACA2Q9H009 215 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 DDX47Q9H0S4 455 aaKnown RBP23.1■■□□□ 1.29
ATG4D-209ENST00000588857 PLEKHA4Q9H4M7 779 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 CCSER2Q9H7U1 834 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 MARCH2Q9P0N8 246 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 RASAL2Q9UJF2 1139 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 TLR6Q9Y2C9 796 aa23.1■■□□□ 1.29
ATG4D-209ENST00000588857 TRANK1O15050 2925 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 ZNF487B1APH4 448 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 CST8O60676 142 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 CLASP2O75122 1294 aaKnown RBP23.09■■□□□ 1.29
ATG4D-209ENST00000588857 TBX18O95935 607 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 RHOXF2BP0C7M4 288 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 SLC2A3P11169 496 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 POU3F3P20264 500 aaPredicted RBP23.09■■□□□ 1.29
ATG4D-209ENST00000588857 ARL4AP40617 200 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 TFDP2Q14188 446 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 PPP2R5DQ14738 602 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 NAA30Q147X3 362 aaPredicted RBP23.09■■□□□ 1.29
ATG4D-209ENST00000588857 ANKRD20A8PQ5CZ79 823 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 HECTD3Q5T447 861 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 MIB1Q86YT6 1006 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 RNF157Q96PX1 679 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 RHOXF2Q9BQY4 288 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 LMAN2LQ9H0V9 348 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 SLITRK6Q9H5Y7 841 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 TMPRSS4Q9NRS4 437 aa23.09■■□□□ 1.29
ATG4D-209ENST00000588857 MYO9BQ13459 2157 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 OBSL1O75147 1896 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 CHRNA3P32297 505 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 ATP5C1P36542 298 aaKnown RBP23.08■■□□□ 1.29
ATG4D-209ENST00000588857 TBX4P57082 545 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 DYNLT1P63172 113 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 ADCY2Q08462 1091 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 NNTQ13423 1086 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 PABPC1LQ4VXU2 614 aaKnown RBP23.08■■□□□ 1.29
ATG4D-209ENST00000588857 GLE1Q53GS7 698 aaKnown RBP23.08■■□□□ 1.29
ATG4D-209ENST00000588857 BBS12Q6ZW61 710 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 PYROXD2Q8N2H3 581 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 CCDC26Q8TAB7 109 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.08■■□□□ 1.29
ATG4D-209ENST00000588857 ARHGEF38Q9NXL2 777 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 RCOR3Q9P2K3 495 aaPredicted RBP23.08■■□□□ 1.29
ATG4D-209ENST00000588857 DNMT3LQ9UJW3 386 aa23.08■■□□□ 1.29
ATG4D-209ENST00000588857 ATG2AQ2TAZ0 1938 aa23.08■■□□□ 1.28
ATG4D-209ENST00000588857 DENND4CQ5VZ89 1909 aa23.08■■□□□ 1.28
ATG4D-209ENST00000588857 H3BRJ5 948 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms