RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 KCNK3O14649 394 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 LINC01565O15544 149 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 MSI1O43347 362 aaKnown RBP16.77■□□□□ 0.28
SS18-226ENST00000585241 SLC2A3P11169 496 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 CCR1P32246 355 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 PTPN7P35236 360 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 ADRA1BP35368 520 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 TBX4P57082 545 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 CYP4F8P98187 520 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 DPYSL2Q16555 572 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 TAZQ16635 292 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 SLC5A9Q2M3M2 681 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 ATP13A4Q4VNC1 1196 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 ERMARDQ5T6L9 678 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 SCYL2Q6P3W7 929 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 GPR149Q86SP6 731 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 RASGEF1CQ8N431 466 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 C12orf76Q8N812 135 aaPredicted RBP16.77■□□□□ 0.28
SS18-226ENST00000585241 RBM41Q96IZ5 413 aaKnown RBP16.77■□□□□ 0.28
SS18-226ENST00000585241 ATXN3LQ9H3M9 355 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 IGFLR1Q9H665 355 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 ZWILCHQ9H900 591 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 ANLNQ9NQW6 1124 aa16.77■□□□□ 0.28
SS18-226ENST00000585241 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.77■□□□□ 0.28
SS18-226ENST00000585241 TTC7AQ9ULT0 858 aaPredicted RBP16.77■□□□□ 0.28
SS18-226ENST00000585241 SYNJ2BP-COX16A0A087WUM0 186 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 C3orf70A6NLC5 250 aaPredicted RBP16.76■□□□□ 0.27
SS18-226ENST00000585241 SPDYE4A6NLX3 237 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 ZNF197O14709 1029 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 KRT1P04264 644 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 DNA2P51530 1060 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 COPS2P61201 443 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 SLC7A9P82251 487 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 MTA1Q13330 715 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 PDK2Q15119 407 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 SMTNL2Q2TAL5 461 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 ARL13BQ3SXY8 428 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 KCNT1Q5JUK3 1230 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 DNTTIP2Q5QJE6 756 aaKnown RBP16.76■□□□□ 0.27
SS18-226ENST00000585241 TXNDC8Q6A555 127 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 GRASPQ7Z6J2 395 aaPredicted RBP16.76■□□□□ 0.27
SS18-226ENST00000585241 RCOR2Q8IZ40 523 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 COG1Q8WTW3 980 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 RAPGEF5Q92565 580 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 TCEAL4Q96EI5 215 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 ZFRQ96KR1 1074 aaKnown RBP16.76■□□□□ 0.27
SS18-226ENST00000585241 KLF16Q9BXK1 252 aaPredicted RBP16.76■□□□□ 0.27
SS18-226ENST00000585241 RNF38Q9H0F5 515 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 WDCPQ9H6R7 721 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 L2HGDHQ9H9P8 463 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 MTMR10Q9NXD2 777 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 COX16Q9P0S2 106 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 CLEC1BQ9P126 229 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 RNF14Q9UBS8 474 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 CDC23Q9UJX2 597 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 AP4E1Q9UPM8 1137 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 MRFAP1Q9Y605 127 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 CDH23Q9H251 3354 aa16.76■□□□□ 0.27
SS18-226ENST00000585241 C2orf16Q68DN1 1984 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 SLC12A8A0AV02 714 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 URI1O94763 535 aaPredicted RBP16.75■□□□□ 0.27
SS18-226ENST00000585241 ZRANB2O95218 330 aaKnown RBP eCLIP16.75■□□□□ 0.27
SS18-226ENST00000585241 PYGMP11217 842 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 KDELR1P24390 212 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 GJC1P36383 396 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 ZNF135P52742 658 aaPredicted RBP16.75■□□□□ 0.27
SS18-226ENST00000585241 NTHL1P78549 312 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 COG7P83436 770 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 SEMA3BQ13214 749 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 PPP2R5EQ16537 467 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 CA9Q16790 459 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 ZC3H12AQ5D1E8 599 aaKnown RBP16.75■□□□□ 0.27
SS18-226ENST00000585241 EFHC2Q5JST6 749 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 RARS2Q5T160 578 aaKnown RBP16.75■□□□□ 0.27
SS18-226ENST00000585241 NUGGCQ68CJ6 796 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 TMC5Q6UXY8 1006 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 MIB1Q86YT6 1006 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 CREG2Q8IUH2 290 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 TSC1Q92574 1164 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 PLD4Q96BZ4 506 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 SLC22A12Q96S37 553 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 HAPLN3Q96S86 360 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 PSMB7Q99436 277 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 TKTL2Q9H0I9 626 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 OSBPL2Q9H1P3 480 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 TASP1Q9H6P5 420 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 PIDD1Q9HB75 910 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 PCDH18Q9HCL0 1135 aa16.75■□□□□ 0.27
SS18-226ENST00000585241 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.75■□□□□ 0.27
SS18-226ENST00000585241 RCOR3Q9P2K3 495 aaPredicted RBP16.75■□□□□ 0.27
SS18-226ENST00000585241 TRAV19A0A0A6YYK7 116 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 SRGAP2O75044 1071 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 TBX10O75333 385 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 GJA1P17302 382 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 HDCP19113 662 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 WEE1P30291 646 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 L1CAMP32004 1257 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 CXCR5P32302 372 aa16.74■□□□□ 0.27
SS18-226ENST00000585241 NRG1Q02297 640 aaPredicted RBP16.74■□□□□ 0.27
SS18-226ENST00000585241 TEAD2Q15562 447 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms