RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 L1CAMP32004 1257 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 CDKN2BP42772 138 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 PGFP49763 221 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 PITX1P78337 314 aaPredicted RBP15.86■□□□□ 0.13
SS18-215ENST00000580642 LONRF2Q1L5Z9 754 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 DAB2IPQ5VWQ8 1189 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 FAM131BQ86XD5 332 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 CCDC50Q8IVM0 306 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 TTC13Q8NBP0 860 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 GDPD5Q8WTR4 605 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 RAPGEF5Q92565 580 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 RNF34Q969K3 372 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 FAF2Q96CS3 445 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 RUNDC3BQ96NL0 473 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 RETREG1Q9H6L5 497 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 SFXN1Q9H9B4 322 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 CALCOCO1Q9P1Z2 691 aa15.86■□□□□ 0.13
SS18-215ENST00000580642 TADA3O75528 432 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 ZNF189O75820 626 aaPredicted RBP15.85■□□□□ 0.13
SS18-215ENST00000580642 LATS1O95835 1130 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 APOEP02649 317 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 ZFXP17010 805 aaPredicted RBP15.85■□□□□ 0.13
SS18-215ENST00000580642 ARL4AP40617 200 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 CDH6P55285 790 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 TBX4P57082 545 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 KRT81Q14533 505 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 ATP13A4Q4VNC1 1196 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 KCNT1Q5JUK3 1230 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 TXNRD3NBQ6F5E7 133 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 TMEM150AQ86TG1 271 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 EFHBQ8N7U6 833 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 ATP6V0D2Q8N8Y2 350 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 SPATA4Q8NEY3 305 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 TSC1Q92574 1164 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 HSPH1Q92598 858 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 PLD4Q96BZ4 506 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 BTN2A3PQ96KV6 586 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 CAPZA3Q96KX2 299 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 MAK16Q9BXY0 300 aaKnown RBP15.85■□□□□ 0.13
SS18-215ENST00000580642 NACA2Q9H009 215 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 TKTL2Q9H0I9 626 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 PCDH18Q9HCL0 1135 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 DONSONQ9NYP3 566 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 GREB1Q4ZG55 1949 aa15.85■□□□□ 0.13
SS18-215ENST00000580642 hCG_1818297A0A087WSY0 165 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 EPOPA6NHQ4 379 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 EFCAB8A8MWE9 144 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 H3BRJ5 948 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 COCHO43405 550 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 HOXB8P17481 243 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 GABRR2P28476 465 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 NRIP1P48552 1158 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 TERF1P54274 439 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 EFEMP1Q12805 493 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 KLF1Q13351 362 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 ZNF211Q13398 564 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 DPYSL3Q14195 570 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 SMTNL2Q2TAL5 461 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 MFSD7Q6UXD7 560 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 BBS12Q6ZW61 710 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 PDZD4Q76G19 769 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 ADGRD2Q7Z7M1 963 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 CCDC185Q8N715 623 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 KIAA1958Q8N8K9 716 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 ADAM32Q8TC27 787 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 RNF25Q96BH1 459 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 FCRL2Q96LA5 508 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 EPAS1Q99814 870 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 CARD6Q9BX69 1037 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 DHX35Q9H5Z1 703 aaKnown RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 CCSER2Q9H7U1 834 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 ZNF334Q9HCZ1 680 aaPredicted RBP15.84■□□□□ 0.13
SS18-215ENST00000580642 SFMBT1Q9UHJ3 866 aa15.84■□□□□ 0.13
SS18-215ENST00000580642 CCDC195A0A1B0GUA6 201 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 PDE2AO00408 941 aaPredicted RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 KRIT1O00522 736 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 RIOK3O14730 519 aaKnown RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 PER2O15055 1255 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 CCL16O15467 120 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 WEE1P30291 646 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 GJC1P36383 396 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 HARS2P49590 506 aaKnown RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 ATXN1P54253 815 aaKnown RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 MLLT6P55198 1093 aaPredicted RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 SLC7A9P82251 487 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 SEMA3BQ13214 749 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 CYP1B1Q16678 543 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 ARHGAP15Q53QZ3 475 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 ZC3H12AQ5D1E8 599 aaKnown RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 DRICH1Q6PGQ1 229 aaPredicted RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 GAREM2Q75VX8 874 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 DDX42Q86XP3 938 aaKnown RBP eCLIP15.83■□□□□ 0.12
SS18-215ENST00000580642 MS4A14Q96JA4 679 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 RNF157Q96PX1 679 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 CORO1BQ9BR76 489 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 CALN1Q9BXU9 219 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 DCLK3Q9C098 648 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 MTMR10Q9NXD2 777 aa15.83■□□□□ 0.12
SS18-215ENST00000580642 FEZ2Q9UHY8 353 aaPredicted RBP15.83■□□□□ 0.12
SS18-215ENST00000580642 RASAL2Q9UJF2 1139 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms