RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ADORA2AP29274 412 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CNGA3Q16281 694 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SPDYAQ5MJ70 313 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 DHDDSQ86SQ9 333 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 CDKL3Q8IVW4 592 aaPredicted RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 CEP70Q8NHQ1 597 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 B4GALNT2Q8NHY0 566 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SREK1Q8WXA9 508 aaKnown RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 ABTB1Q969K4 478 aaPredicted RBP14.95□□□□□ -0.02
VPS35-210ENST00000568784 KIF12Q96FN5 646 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 AFG3L2Q9Y4W6 797 aa14.95□□□□□ -0.02
VPS35-210ENST00000568784 SLC15A5A6NIM6 579 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 SPATA31C2B4DYI2 1134 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 KCNK1O00180 336 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 SMAPO00193 183 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 RNASEH1O60930 286 aaKnown RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 STAG3L1P0CL83 205 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 RALBP11234 206 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 ACTR3P61158 418 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 OLIG2Q13516 323 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 XRRA1Q6P2D8 792 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 RTKN2Q8IZC4 609 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 ZNF276Q8N554 614 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 CCNYL1Q8N7R7 359 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 SLC4A11Q8NBS3 891 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 MMADHCQ9H3L0 296 aaPredicted RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 POPDC2Q9HBU9 364 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 HACL1Q9UJ83 578 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 E7ESA3 106 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 RFPL1O75677 317 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 ZNF132P52740 706 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 ZNF143P52747 638 aaPredicted RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 TMEM62Q0P6H9 643 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 NME3Q13232 169 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 C1orf127Q8N9H9 656 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 PCDH19Q8TAB3 1148 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 NLRP7Q8WX94 980 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 COPS5Q92905 334 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 TMA16Q96EY4 203 aaKnown RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 SPATA33Q96N06 139 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 KLHL4Q9C0H6 718 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 MAP3K20Q9NYL2 800 aaKnown RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 SCN9AQ15858 1988 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 CCNFP41002 786 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 MRPS22P82650 360 aaKnown RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 KCNJ11Q14654 390 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 DCAF15Q66K64 600 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 MICALL2Q8IY33 904 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 CNKSR2Q8WXI2 1034 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 ZNF669Q96BR6 464 aaPredicted RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 FAM136AQ96C01 138 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 PDLIM7Q9NR12 457 aa14.94□□□□□ -0.02
VPS35-210ENST00000568784 KLHL8Q9P2G9 620 aaPredicted RBP14.94□□□□□ -0.02
VPS35-210ENST00000568784 DNAJC6O75061 913 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 KLHL2O95198 593 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 PGGT1BP53609 377 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 IFRD2Q12894 506 aaPredicted RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 ZPBP2Q6X784 338 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 PTAR1Q7Z6K3 402 aaPredicted RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 CAND1Q86VP6 1230 aaKnown RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 CMASQ8NFW8 434 aaPredicted RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 AZIN2Q96A70 460 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 EBNA1BP2Q99848 306 aaKnown RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 DTNAQ9Y4J8 743 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 TBC1D12O60347 775 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 MAGEC1O60732 1142 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 OR6B1O95007 311 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 SERPINA6P08185 405 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 HOXC6P09630 235 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 DLG1Q12959 904 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 BOLA3Q53S33 107 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 SFT2D3Q587I9 215 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 SGF29Q96ES7 293 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 HIC2Q96JB3 615 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 C7orf26Q96N11 449 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 NT5C1AQ9BXI3 368 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 PCDH18Q9HCL0 1135 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 XPNPEP3Q9NQH7 507 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 UBP1Q9NZI7 540 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 MFHAS1Q9Y4C4 1052 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 MSCO60682 206 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 SIN3BO75182 1162 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 HSDL1Q3SXM5 330 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 IER5Q5VY09 327 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 FOXB2Q5VYV0 432 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 DNAJC1Q96KC8 554 aaKnown RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 FRMD8P1Q9BZ68 369 aaPredicted RBP14.93□□□□□ -0.02
VPS35-210ENST00000568784 CDT1Q9H211 546 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 CAB39LQ9H9S4 337 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 S100A14Q9HCY8 104 aa14.93□□□□□ -0.02
VPS35-210ENST00000568784 PFDN1O60925 122 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 VTNP04004 478 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 DPEP1P16444 411 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 TFE3P19532 575 aaPredicted RBP14.92□□□□□ -0.02
VPS35-210ENST00000568784 MX2P20592 715 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 CLDN10P78369 228 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 CNPY1Q3B7I2 92 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 Q3C1V9 767 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 LIN52Q52LA3 116 aa14.92□□□□□ -0.02
VPS35-210ENST00000568784 KDELC2Q7Z4H8 507 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms