RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 HRO43593 1189 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 CACNG3O60359 315 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 CISD3P0C7P0 127 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 SDHBP21912 280 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 TNFRSF4P43489 277 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 KIR2DL1P43626 348 aaPredicted RBP15.69■□□□□ 0.1
VPS39-210ENST00000568357 COL9A2Q14055 689 aaPredicted RBP15.69■□□□□ 0.1
VPS39-210ENST00000568357 ANO6Q4KMQ2 910 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 SYPL2Q5VXT5 272 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 LONP2Q86WA8 852 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 CCDC33Q8N5R6 958 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 CCDC26Q8TAB7 109 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 CPXM1Q96SM3 734 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 STK33Q9BYT3 514 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 GANQ9H2C0 597 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 ZDHHC4Q9NPG8 344 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 PLCB1Q9NQ66 1216 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 HCN2Q9UL51 889 aa15.69■□□□□ 0.1
VPS39-210ENST00000568357 EPHB6O15197 1021 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 NCAM1P13591 858 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 ATP1A3P13637 1013 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 CYP11B1P15538 503 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 CDK11BP21127 795 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 KRT9P35527 623 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 TIE1P35590 1138 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 CHKAP35790 457 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 HARS2P49590 506 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 BPIFB4P59827 614 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 MRPS21P82921 87 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 SRSF5Q13243 272 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 DMC1Q14565 340 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 TAF5Q15542 800 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 FYB2Q5VWT5 728 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 TOGARAM2Q6ZUX3 1019 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 FAM217AQ8IXS0 508 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 ALLCQ8N6M5 410 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 AOPEPQ8N6M6 819 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 IL17RCQ8NAC3 791 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 C1orf131Q8NDD1 294 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 GOLGA1Q92805 767 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 FAM149B1Q96BN6 582 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 PIWIL1Q96J94 861 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 PPP1R13BQ96KQ4 1090 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 XPO6Q96QU8 1125 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 HHIPQ96QV1 700 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 RTKNQ9BST9 563 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 EPC1Q9H2F5 836 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 FAM207AQ9NSI2 230 aaPredicted RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 DNAJC17Q9NVM6 304 aaKnown RBP15.68■□□□□ 0.1
VPS39-210ENST00000568357 FBXO10Q9UK96 956 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 SIK3Q9Y2K2 1263 aa15.68■□□□□ 0.1
VPS39-210ENST00000568357 F8VZ95 297 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 SART1O43290 800 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 PENKP01210 267 aaPredicted RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 IGLV3-27P01718 113 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 TPM2P07951 284 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 HNRNPLP14866 589 aaKnown RBP eCLIP15.67■□□□□ 0.1
VPS39-210ENST00000568357 YWHAZP63104 245 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 LMNB2Q03252 620 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 FKBP15Q5T1M5 1219 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 GRAMD4Q6IC98 578 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 WDR5BQ86VZ2 330 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 DHX40Q8IX18 779 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 CPXM2Q8N436 756 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 CAMKK1Q8N5S9 505 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 TERB1Q8NA31 727 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 DQX1Q8TE96 717 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 DDX1Q92499 740 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 ACDQ96AP0 544 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 FUCA2Q9BTY2 467 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 NAT10Q9H0A0 1025 aaKnown RBP15.67■□□□□ 0.1
VPS39-210ENST00000568357 STOML2Q9UJZ1 356 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 CLEC4EQ9ULY5 219 aa15.67■□□□□ 0.1
VPS39-210ENST00000568357 LGALS16A8MUM7 142 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 PRR5-ARHGAP8B1AHC4 643 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 PRRT4C9JH25 899 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 SGK1O00141 431 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 GFRA2O00451 464 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 TSPAN3O60637 253 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 ADAM23O75077 832 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 KLF8O95600 359 aaPredicted RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 ERBB2P04626 1255 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 TGM1P22735 817 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 DGKGP49619 791 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 TBX4P57082 545 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 POLR2FP61218 127 aaKnown RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 ARHGAP8P85298 464 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 UBXN1Q04323 297 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 SYCP1Q15431 976 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 KLHL40Q2TBA0 621 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 PREPLQ4J6C6 727 aaPredicted RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 C10orf76Q5T2E6 689 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 TAF3Q5VWG9 929 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 TMEM92Q6UXU6 159 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 BEND5Q7L4P6 421 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 NOP9Q86U38 636 aaKnown RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 GPR161Q8N6U8 529 aaKnown RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 TXNDC5Q8NBS9 432 aaKnown RBP15.66■□□□□ 0.1
VPS39-210ENST00000568357 ANKRD20A12PQ8NF67 263 aa15.66■□□□□ 0.1
VPS39-210ENST00000568357 ADAM32Q8TC27 787 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms