RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 FTLP02792 175 aaPredicted RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 FAM228BP0C875 321 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 RRM1P23921 792 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 CCR1P32246 355 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 FLT3P36888 993 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 SLC11A2P49281 568 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TAF5Q15542 800 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 MLF2Q15773 248 aaPredicted RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 SLC25A52Q3SY17 297 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 CCDC122Q5T0U0 273 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TRIM68Q6AZZ1 485 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 ALKBH5Q6P6C2 394 aaKnown RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 Q6ZNB5 142 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TRIM67Q6ZTA4 783 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 BBS7Q8IWZ6 715 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 ASIC4Q96FT7 647 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 DDX50Q9BQ39 737 aaKnown RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 MFSD1Q9H3U5 465 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 NHEJ1Q9H9Q4 299 aaPredicted RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 LUC7LQ9NQ29 371 aaKnown RBP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 HEBP1Q9NRV9 189 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TAS2R14Q9NYV8 317 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 SLC12A6Q9UHW9 1150 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TMEM59LQ9UK28 342 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 CA14Q9ULX7 337 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 PIAS3Q9Y6X2 628 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 MUC3AQ02505 3323 aa12.67□□□□□ -0.38
SF3B3-208ENST00000567250 TYW5A2RUC4 315 aaKnown RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 SIGLEC16A6NMB1 481 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 MAN2B1O00754 1011 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 IPO7O95373 1038 aaKnown RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CYBBP04839 570 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 ABCB4P21439 1286 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 GPD1P21695 349 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CYLC1P35663 651 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 PTPN9P43378 593 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 GSDMDP57764 484 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 DEUP1Q05D60 604 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 BRMS1LQ5PSV4 323 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 TPRG1Q6ZUI0 275 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 RALGPS2Q86X27 583 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 DENND1CQ8IV53 801 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 SIX5Q8N196 739 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CPXM2Q8N436 756 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 ATP6V0D2Q8N8Y2 350 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 ADAM32Q8TC27 787 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CTNNBL1Q8WYA6 563 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 RNF34Q969K3 372 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 AZIN2Q96A70 460 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 PGAP3Q96FM1 320 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 MCEEQ96PE7 176 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 NPY6RQ99463 290 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 DDX23Q9BUQ8 820 aaKnown RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 IRX2Q9BZI1 471 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 ECT2Q9H8V3 914 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 HPS4Q9NQG7 708 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 GTSE1Q9NYZ3 720 aa12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CNOT8Q9UFF9 292 aaKnown RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 MRPS17Q9Y2R5 130 aaKnown RBP12.66□□□□□ -0.38
SF3B3-208ENST00000567250 CUL9Q8IWT3 2517 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SYNJ2BP-COX16A0A087WUM0 186 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SCAMP3O14828 347 aaKnown RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 GREM1O60565 184 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 CYP17A1P05093 508 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 ADH5P11766 374 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 ARSAP15289 507 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 PDGFRAP16234 1089 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 CTHP32929 405 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 RDXP35241 583 aaKnown RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 MRE11P49959 708 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 GAD2Q05329 585 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 GFPT1Q06210 699 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 TNK2Q07912 1038 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 NME3Q13232 169 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 PPP2R5DQ14738 602 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 PREPLQ4J6C6 727 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SLC44A4Q53GD3 710 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 C10orf76Q5T2E6 689 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 ACBD5Q5T8D3 534 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 PLEKHA7Q6IQ23 1121 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 STRADAQ7RTN6 431 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 TMTC1Q8IUR5 882 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 CCDC170Q8IYT3 715 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 EMC1Q8N766 993 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SPC24Q8NBT2 197 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 KHSRPQ92945 711 aaKnown RBP eCLIP12.65□□□□□ -0.382e-6■■□□□ 11.7
SF3B3-208ENST00000567250 NT5C3BQ969T7 300 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SLC39A13Q96H72 371 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 BTN2A3PQ96KV6 586 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 FCRL2Q96LA5 508 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 CFAP57Q96MR6 1250 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 SPHK2Q9NRA0 654 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 COX16Q9P0S2 106 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 STOML2Q9UJZ1 356 aa12.65□□□□□ -0.38
SF3B3-208ENST00000567250 AGO1Q9UL18 857 aaKnown RBP12.65□□□□□ -0.38
SF3B3-208ENST00000567250 TCRBV5S1A1TA0A578 114 aa12.64□□□□□ -0.39
SF3B3-208ENST00000567250 TMEM221A6NGB7 291 aa12.64□□□□□ -0.39
SF3B3-208ENST00000567250 C2CD4BA6NLJ0 364 aa12.64□□□□□ -0.39
SF3B3-208ENST00000567250 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms