RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 C1RP00736 705 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 ADCY2Q08462 1091 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 SIX1Q15475 284 aaPredicted RBP31.74■■■□□ 2.67
CTCF-203ENST00000566078 ADGRD2Q7Z7M1 963 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 RFX6Q8HWS3 928 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 PYROXD2Q8N2H3 581 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 PLEKHA4Q9H4M7 779 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 MTMR10Q9NXD2 777 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 MARCH2Q9P0N8 246 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 MYO9BQ13459 2157 aa31.74■■■□□ 2.67
CTCF-203ENST00000566078 TJP3O95049 919 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 PPP3CCP48454 512 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 BRMS1LQ5PSV4 323 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 TADA2BQ86TJ2 420 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 RBM23Q86U06 439 aaKnown RBP31.73■■■□□ 2.67
CTCF-203ENST00000566078 MIB1Q86YT6 1006 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 KLHL7Q8IXQ5 586 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 MMGT1Q8N4V1 131 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 SLC22A17Q8WUG5 538 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 UBXN4Q92575 508 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 TIFAQ96CG3 184 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 TLR6Q9Y2C9 796 aa31.73■■■□□ 2.67
CTCF-203ENST00000566078 HELZP42694 1942 aaKnown RBP31.73■■■□□ 2.67
CTCF-203ENST00000566078 UQCRHLA0A096LP55 91 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 I6L893 689 aaPredicted RBP31.72■■■□□ 2.67
CTCF-203ENST00000566078 CCL16O15467 120 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 CTIFO43310 598 aaKnown RBP31.72■■■□□ 2.67
CTCF-203ENST00000566078 UQCRHP07919 91 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 CCR1P32246 355 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 GTF2F1P35269 517 aaKnown RBP eCLIP31.72■■■□□ 2.67
CTCF-203ENST00000566078 HECTD3Q5T447 861 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 ZNF276Q8N554 614 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 PRELID2Q8N945 189 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 KRT12Q99456 494 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 ZNF670Q9BS34 389 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 ARHGEF38Q9NXL2 777 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 EFR3BQ9Y2G0 817 aa31.72■■■□□ 2.67
CTCF-203ENST00000566078 TBX4P57082 545 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 CHRDL2Q6WN34 429 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 VSIG1Q86XK7 387 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 DDX47Q9H0S4 455 aaKnown RBP31.71■■■□□ 2.67
CTCF-203ENST00000566078 TMEM51Q9NW97 253 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 ZMYND10O75800 440 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 DYNLT1P63172 113 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 NNTQ13423 1086 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 PPP2R5DQ14738 602 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 TRIP4Q15650 581 aaPredicted RBP31.71■■■□□ 2.67
CTCF-203ENST00000566078 ERCC6LQ2NKX8 1250 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 ANKRD20A8PQ5CZ79 823 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 RTL10Q7L3V2 364 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 TMEM150AQ86TG1 271 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 TSC1Q92574 1164 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 MAK16Q9BXY0 300 aaKnown RBP31.71■■■□□ 2.67
CTCF-203ENST00000566078 NACA2Q9H009 215 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 IL21Q9HBE4 155 aa31.71■■■□□ 2.67
CTCF-203ENST00000566078 PHF2O75151 1096 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 F11P03951 625 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 IL4RP24394 825 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 ATP5C1P36542 298 aaKnown RBP31.7■■■□□ 2.66
CTCF-203ENST00000566078 TERF1P54274 439 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 SMAD3P84022 425 aaKnown RBP31.7■■■□□ 2.66
CTCF-203ENST00000566078 NAA30Q147X3 362 aaPredicted RBP31.7■■■□□ 2.66
CTCF-203ENST00000566078 TMC8Q8IU68 726 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 HS6ST3Q8IZP7 471 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 FCRL2Q96LA5 508 aaPredicted RBP31.7■■■□□ 2.66
CTCF-203ENST00000566078 RNF157Q96PX1 679 aa31.7■■■□□ 2.66
CTCF-203ENST00000566078 R3HDM2Q9Y2K5 976 aaKnown RBP31.7■■■□□ 2.66
CTCF-203ENST00000566078 NOTCH4Q99466 2003 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 SLC12A8A0AV02 714 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 ZNF487B1APH4 448 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 CST8O60676 142 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 RFPL2O75678 378 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 ARL4AP40617 200 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 TUBP50607 506 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 TUBB4BP68371 445 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 BBS12Q6ZW61 710 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 FAF2Q96CS3 445 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 SLC39A13Q96H72 371 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 SLTMQ9NWH9 1034 aaKnown RBP eCLIP31.69■■■□□ 2.66
CTCF-203ENST00000566078 DNMT3LQ9UJW3 386 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 HCFC2Q9Y5Z7 792 aa31.69■■■□□ 2.66
CTCF-203ENST00000566078 GOT1P17174 413 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 GABRR2P28476 465 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 RGS19P49795 217 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 PABPC1LQ4VXU2 614 aaKnown RBP31.68■■■□□ 2.66
CTCF-203ENST00000566078 TRAF3IP1Q8TDR0 691 aaPredicted RBP31.68■■■□□ 2.66
CTCF-203ENST00000566078 HDAC7Q8WUI4 952 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 C1orf54Q8WWF1 131 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 CORO1BQ9BR76 489 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 LRRC3Q9BY71 257 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 TLE6Q9H808 572 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 ASAH2Q9NR71 780 aa31.68■■■□□ 2.66
CTCF-203ENST00000566078 CWC15Q9P013 229 aaKnown RBP31.68■■■□□ 2.66
CTCF-203ENST00000566078 C2orf78A6NCI8 922 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 H3BRJ5 948 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 RFXAPO00287 272 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 COCHO43405 550 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 CREB3O43889 395 aa31.67■■■□□ 2.66
CTCF-203ENST00000566078 MOCS2O96007 188 aaPredicted RBP31.67■■■□□ 2.66
CTCF-203ENST00000566078 HMBSP08397 361 aa31.67■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms