RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HEY1Q9Y5J3 304 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 PTPRSQ13332 1948 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 FAM92AA1XBS5 289 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 LCHNA4D1U4 455 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 SLC38A8A6NNN8 435 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 CREB3O43889 395 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 ATP2A2P16615 1042 aaKnown RBP22.07■■□□□ 1.12
CLN3-209ENST00000561689 GBP1P32455 592 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 ARL4AP40617 200 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 TUFMP49411 452 aaKnown RBP22.07■■□□□ 1.12
CLN3-209ENST00000561689 PTK6Q13882 451 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 EMBQ6PCB8 327 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 SYDE1Q6ZW31 735 aaPredicted RBP22.07■■□□□ 1.12
CLN3-209ENST00000561689 GLIS1Q8NBF1 620 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 RAD9AQ99638 391 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 SMOC2Q9H3U7 446 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 CYP4F11Q9HBI6 524 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 OGFRQ9NZT2 677 aa22.07■■□□□ 1.12
CLN3-209ENST00000561689 DRG1Q9Y295 367 aaKnown RBP22.07■■□□□ 1.12
CLN3-209ENST00000561689 ZNF487B1APH4 448 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 FAM72CH0Y354 149 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 TLL1O43897 1013 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 MAP3K6O95382 1288 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 ATF2P15336 505 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 AMPD1P23109 780 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 CA8P35219 290 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 DRG2P55039 364 aaKnown RBP22.06■■□□□ 1.12
CLN3-209ENST00000561689 EIF3EP60228 445 aaKnown RBP22.06■■□□□ 1.12
CLN3-209ENST00000561689 LMNB2Q03252 620 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 ARL13BQ3SXY8 428 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 FAM72AQ5TYM5 149 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 FAM72DQ6L9T8 149 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 HDXQ7Z353 690 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 FAM72BQ86X60 149 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 ARHGAP18Q8N392 663 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 ALLCQ8N6M5 410 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 EIF1ADQ8N9N8 165 aaKnown RBP22.06■■□□□ 1.12
CLN3-209ENST00000561689 KLHL23Q8NBE8 558 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 CLP1Q92989 425 aaKnown RBP22.06■■□□□ 1.12
CLN3-209ENST00000561689 FRMD8P1Q9BZ68 369 aaPredicted RBP22.06■■□□□ 1.12
CLN3-209ENST00000561689 GRHL1Q9NZI5 618 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 SNX10Q9Y5X0 201 aa22.06■■□□□ 1.12
CLN3-209ENST00000561689 IRAK2O43187 625 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 ITGAVP06756 1048 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 ZSCAN5DPP0CG00 497 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 ETS1P14921 441 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 AIF1P55008 147 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 PLTPP55058 493 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 SCAPQ12770 1279 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 EIF4EBP2Q13542 120 aaPredicted RBP22.05■■□□□ 1.12
CLN3-209ENST00000561689 CASP8Q14790 479 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 RASIP1Q5U651 963 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 ZC3H18Q86VM9 953 aaKnown RBP22.05■■□□□ 1.12
CLN3-209ENST00000561689 ZBTB9Q96C00 473 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 ETNK2Q9NVF9 386 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 SGK1O00141 431 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 MCF2LO15068 1137 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 KRT14P02533 472 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 NOMO1Q15155 1222 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 TPGS2Q68CL5 300 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 MFHAS1Q9Y4C4 1052 aa22.05■■□□□ 1.12
CLN3-209ENST00000561689 COL4A4P53420 1690 aaPredicted RBP22.04■■□□□ 1.12
CLN3-209ENST00000561689 H3BRJ5 948 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 TEX28O15482 410 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 TBX18O95935 607 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 RBP3P10745 1247 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 TGM2P21980 687 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 GGCXP38435 758 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 ADCY8P40145 1251 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 GBE1Q04446 702 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 RAB33AQ14088 237 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 ZDHHC24Q6UX98 284 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 CAVIN3Q969G5 261 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 LBHD1Q9BQE6 289 aaPredicted RBP22.04■■□□□ 1.12
CLN3-209ENST00000561689 HTATIP2Q9BUP3 242 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 ARHGEF4Q9NR80 690 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 TLR8Q9NR97 1041 aaKnown RBP22.04■■□□□ 1.12
CLN3-209ENST00000561689 ZDHHC18Q9NUE0 388 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 FAM53CQ9NYF3 392 aa22.04■■□□□ 1.12
CLN3-209ENST00000561689 RCOR3Q9P2K3 495 aaPredicted RBP22.04■■□□□ 1.12
CLN3-209ENST00000561689 IFNB1P01574 187 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 RARGP13631 454 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 KLRC2P26717 231 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 GDF10P55107 478 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 FBXO25Q8TCJ0 367 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 LRRN4Q8WUT4 740 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.03■■□□□ 1.125e-8■■■■■ 65.3
CLN3-209ENST00000561689 DPF3Q92784 378 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 ZBP1Q9H171 429 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 EEF2KO00418 725 aaKnown RBP22.03■■□□□ 1.12
CLN3-209ENST00000561689 LILRB3O75022 631 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 CSPG5O95196 566 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 IVDP26440 423 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 NCBP2-AS2Q69YL0 99 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 RFX8Q6ZV50 586 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 CCDC33Q8N5R6 958 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 CCDC89Q8N998 374 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 PHOSPHO2Q8TCD6 241 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 COMMD8Q9NX08 183 aa22.03■■□□□ 1.12
CLN3-209ENST00000561689 OR12D3Q9UGF7 316 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms