RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FBXO10Q9UK96 956 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 STON1Q9Y6Q2 735 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 NCOR2Q9Y618 2525 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 GON4LQ3T8J9 2241 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 THADAQ6YHU6 1953 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 DNAH14Q0VDD8 3507 aa10.7□□□□□ -0.7
LDLR-214ENST00000560628 LNP1A1A4G5 178 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 BICDL2A1A5D9 508 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 CYBBP04839 570 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 PAEPP09466 180 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 NDUFV2P19404 249 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 ITPKAP23677 461 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 PPP1R2P41236 205 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 HARS2P49590 506 aaKnown RBP10.69□□□□□ -0.7
LDLR-214ENST00000560628 MFAP3P55082 362 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 RPL6Q02878 288 aaKnown RBP10.69□□□□□ -0.7
LDLR-214ENST00000560628 CETN1Q12798 172 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 KCNH2Q12809 1159 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 TRIP4Q15650 581 aaPredicted RBP10.69□□□□□ -0.7
LDLR-214ENST00000560628 CNGA2Q16280 664 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 UAP1L1Q3KQV9 507 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 PKDCCQ504Y2 493 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 PMF1Q6P1K2 205 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 KIAA1324Q6UXG2 1013 aaKnown RBP10.69□□□□□ -0.7
LDLR-214ENST00000560628 CREBRFQ8IUR6 639 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 EHBP1Q8NDI1 1231 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 SLC35F5Q8WV83 523 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 SORCS1Q8WY21 1168 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 KCTD13Q8WZ19 329 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 GABRG3Q99928 467 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 CD248Q9HCU0 757 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 CYP8B1Q9UNU6 501 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 SLC27A6Q9Y2P4 619 aa10.69□□□□□ -0.7
LDLR-214ENST00000560628 ATXN2Q99700 1313 aaKnown RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 IGHV1OR15-9A0A0B4J2B8 117 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 M0QYV0 167 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CDX4O14627 284 aaPredicted RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 PMM2O15305 246 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 MSI1O43347 362 aaKnown RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 KCNK5O95279 499 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 SETSIPP0DME0 302 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 DAOAP59103 153 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 PAK1Q13153 545 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CAMK4Q16566 473 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 TRIM61Q5EBN2 209 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 DAB2IPQ5VWQ8 1189 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 LYSMD4Q5XG99 296 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 PSAPL1Q6NUJ1 521 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 SLC36A4Q6YBV0 504 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 SYT12Q8IV01 421 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 TRIM59Q8IWR1 403 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CPXM2Q8N436 756 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 RBBP8NLQ8NC74 664 aaPredicted RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 CLEC4CQ8WTT0 213 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 PLD4Q96BZ4 506 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 PIWIL1Q96J94 861 aaKnown RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 MRGPRX1Q96LB2 322 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 KREMEN1Q96MU8 473 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CIPCQ9C0C6 399 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 MIS12Q9H081 205 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CD93Q9NPY3 652 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 TMEM9BQ9NQ34 198 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 FSCN3Q9NQT6 498 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 CNGB3Q9NQW8 809 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 ABCC13Q9NSE7 274 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 OLA1Q9NTK5 396 aaKnown RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 ELOVL2Q9NXB9 296 aa10.68□□□□□ -0.7
LDLR-214ENST00000560628 THAP10Q9P2Z0 257 aaPredicted RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.68□□□□□ -0.7
LDLR-214ENST00000560628 HBS1LQ9Y450 684 aaKnown RBP10.68□□□□□ -0.7
LDLR-214ENST00000560628 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.68□□□□□ -0.7
LDLR-214ENST00000560628 GOLGA6L7A0A1B0GV03 622 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 GFRA2O00451 464 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 GIPC1O14908 333 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 P4HA2O15460 535 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 AP5Z1O43299 807 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 ZNF217O75362 1048 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 GNA14O95837 355 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 AFPP02771 609 aaKnown RBP10.67□□□□□ -0.7
LDLR-214ENST00000560628 CFIP05156 583 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 KRT5P13647 590 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 IL12RB1P42701 662 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 MAPK8P45983 427 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 ZNF33AQ06730 810 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 FUT11Q495W5 492 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 MPPE1Q53F39 396 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 TMEM215Q68D42 235 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 UCMAQ8WVF2 138 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 TMA16Q96EY4 203 aaKnown RBP10.67□□□□□ -0.7
LDLR-214ENST00000560628 NUSAP1Q9BXS6 441 aaKnown RBP10.67□□□□□ -0.7
LDLR-214ENST00000560628 INTS2Q9H0H0 1204 aaKnown RBP10.67□□□□□ -0.7
LDLR-214ENST00000560628 UBE2TQ9NPD8 197 aaPredicted RBP10.67□□□□□ -0.7
LDLR-214ENST00000560628 PILRBQ9UKJ0 227 aa10.67□□□□□ -0.7
LDLR-214ENST00000560628 CNOT1A5YKK6 2376 aaKnown RBP10.66□□□□□ -0.7
LDLR-214ENST00000560628 SYNCRIPO60506 623 aaKnown RBP10.66□□□□□ -0.7
LDLR-214ENST00000560628 NDUFS2O75306 463 aa10.66□□□□□ -0.7
LDLR-214ENST00000560628 ENGP17813 658 aa10.66□□□□□ -0.7
LDLR-214ENST00000560628 HOXD9P28356 352 aaPredicted RBP10.66□□□□□ -0.7
LDLR-214ENST00000560628 NOVA1P51513 510 aaKnown RBP10.66□□□□□ -0.7
LDLR-214ENST00000560628 SGSHP51688 502 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms